RNA id: TU1510530


Basic Information

Item Value
RNA id TU1510530
length 1836
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1323233
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71060260 ~ 71062184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGATGCACCTTAAAGACATAACCAGGTCAATATGTGAGGATATATGCAGCATCACATCATGTACCATAGAGACATTCTATTCATCTACCCCCTATAGCTTCAGCAtgacaacacagcaacacagtggtttagtattaaaatatatttgaggAGTGATTCAAAATGAAACAGTTGCATAGCAGAAGAAACAAACGAGCTGATGACGACGTGACAACTATTTGGCAAATGATTTAAGGATGTTTGAAATCCATTGAAATGGTTTCAGAAGAATTGACAGTGGTGACAGGGATCACTAGAGAAAGGCAGTACCTGTGCTGTAGACAACCTCCACAAGTCATGGTGGTTCACAGCTCAATGATTTACACAAGTACCATTCAATTATATACATAAGTAATGATCATTTTAGCATTTCTCTTTTCCATATCTAGTCTCATGTTTCACACACAGGCAATGGTCTACAACGACAATAAGAGCCATTTTGAAATaaacagttttaaaaaatgaTACAGGAAAAACAATTATGGCATAAAACATACCAGCAAACATTCTATActatcagcattgagctaaagtGGTTACTATTTCAGATAAACATTAATCTATCCACATAGTACTATTTCAGATAAACAGAGCCCTGATTCATCTATCCACATACGTACTATGTCTGGACCCAAGATGGAAAAATGAAGACAAATGATTTATTTATTGTATAAAAATGAGAAGATGTTCAACTTCAGCTCTACTGTGTATTGGCACTTAGTTAGAGCTCCTACACACGCTTGACTATGTCCACCAGTTACTTTCAGTGAGACGTTGATATCAATGGTACAGTATGAATGTGCTTCATCTTTTAGTCCGGTGGGCTGGTTTTACTACCGTATAGGGGAGAGCTGACCCTGAATAGGGACACAGTCATCATGTGAAGAGGTTCAAggctgcaccctattcccctgcatagtgcactacactgAGAACCCACATCCAAAATATATCAACGACAAATACAAATCATGACAAAAACAAAGTGATTAACCAGTCATAACTAGCCAATGGCAATGCAGATTACACAGTAAGCAACCAATCGATTAAACACAGGATATGACATCATGGAACACCCTGCTTCTTCGCTTCTAGAAACTTTTTAAAAACACAAATTAACAAACTTAGTTGTGCCCATCCATCCTTTAAAAAATAATTTCATCTTGGTATGTAAAGCGTCTTTTGCATAAAGCCTGTGccataaaaatatatttacatacaacACCACTCTCCTAAGTCGGGTCTACTCTGGAGCACATTAAACATCTGATTCTCTGTGCAAGCTGCAAGTCATCAACACCAGGTTGTATATCATGGGACTGACAGGTATAGTTGCTATGGTTGGTCAGTGGTGGTGTACCGTATATCCTCTGTAGGCTGGGTTTACAGTCTGCTAGCTCACTCAGGGACTATACTGAAGGCCCTTGCTCATTCAGTCTATAGGATCcatagagtcagagagagagagagggagactgatgATTAGGGATCACCCTGTCCAACTTTGGCCCAGTAGCTCTGCTCCTTTACAAGTATTTTGGCCAAAACGCAATAGTTTCCCACAGCTTCTCATGTCTCTAGGGGGAAGAGATATGTGTAGCTCTTCATGGTTGATACTGTAATAGTCTGAAGTCTGCCTCAGTCTCCGGTCCCCCTCATCTTGGTCTACAGAGTGGTCCCAtagctcctccccctttctctaggggtcagaggttaaagATCGGTGACTTTGTTCTCGAGGGCGGCGGCTATCTGCTGCAGCCGCAGGGTCAGCTGTTTACTCTGGGCGGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510497 lncRNA downstream 46757 71013303 ~ 71013503 (-) True G1323206
TU1510496 lncRNA downstream 64465 70995390 ~ 70995795 (-) True G1323205
TU1510457 lncRNA downstream 136884 70922735 ~ 70923376 (-) True G1323167
TU1510441 lncRNA downstream 162208 70897401 ~ 70898052 (-) True G1323151
TU1510428 lncRNA downstream 182658 70876798 ~ 70877602 (-) True G1323138
TU1510532 lncRNA upstream 3641 71065825 ~ 71066300 (-) True G1323235
TU1510535 lncRNA upstream 52250 71114434 ~ 71116114 (-) False G1323238
TU1510536 lncRNA upstream 53417 71115601 ~ 71116548 (-) True G1323238
TU1510547 lncRNA upstream 83421 71145605 ~ 71146142 (-) False G1323248
TU1510548 lncRNA upstream 83421 71145605 ~ 71145978 (-) True G1323248
XM_036945559.1 mRNA downstream 165449 70893229 ~ 70894811 (-) True LOC118938899
XM_036945198.1 mRNA downstream 199928 70792490 ~ 70860332 (-) True LOC110516361
XM_036945200.1 mRNA downstream 200772 70792490 ~ 70859488 (-) False LOC110516361
XM_036945201.1 mRNA downstream 200773 70792490 ~ 70859487 (-) False LOC110516361
XM_036945208.1 mRNA upstream 111786 71173970 ~ 71198905 (-) True LOC118936537
XM_036945211.1 mRNA upstream 137336 71199520 ~ 71237895 (-) False LOC110490709
LOC118938839 mRNA upstream 139064 71201248 ~ 71201989 (-) True LOC118938839
XM_036945212.1 mRNA upstream 139077 71201261 ~ 71213281 (-) False LOC110490706
XM_021564166.2 mRNA upstream 166684 71228868 ~ 71232128 (-) False LOC110490707
TU1510499 other downstream 20738 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 515040 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 523121 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 1160557 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1497220 69562310 ~ 69563040 (-) True G1321997
TU1510608 other upstream 140316 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 140556 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 795099 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 985780 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 994919 72057103 ~ 72150937 (-) True LOC110500989

Expression Profile