RNA id: TU1511113


Basic Information

Item Value
RNA id TU1511113
length 777
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G1323712
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71782522 ~ 71784574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGCCATGTGTAACACGGTCAGATGTTGGTTTAAATTATTAACATGGTAATTCACAGATTACGTTCAAACGTGTCATTACAAAACATTAGTTACATTGTGGAACCAGAATAACATCAGTAGCTACACATGTGGAATAACCTTCAGCAAGTGAATGTGTAATTACACATTCCTTGTTCCAATTGTGTATTAGCTGATTCCATAACAACCCTATGACCTTATAATGACATAGTAGTTCCATAGTTTTTACTATGTCATTACGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAGAGAGTTAACAAGGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAAAGAGTTAACAAGGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAGAGAGTTAACAAGGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAGAGAGTTAACAAGGTTGGTAATGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAAAGAGTTAACAAGGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAAAGAGTTAACAAGGTTGGTAATGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAGAGAGTTAACAAGGTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAAAGAGTTAACAAGTTTATTACTGTTTTAGCTACATAGTAACAGGGGAAACGTAATGTAAAGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511076 lncRNA downstream 44360 71737816 ~ 71738162 (-) True G1323688
TU1511045 lncRNA downstream 140190 71641233 ~ 71642332 (-) True G1323665
TU1510907 lncRNA downstream 193334 71588960 ~ 71589188 (-) True G1323549
TU1510887 lncRNA downstream 224045 71558142 ~ 71558477 (-) True G1323531
TU1510882 lncRNA downstream 231481 71550696 ~ 71551041 (-) True G1323526
TU1511124 lncRNA upstream 10 71784584 ~ 71784982 (-) True G1323713
TU1511134 lncRNA upstream 15108 71799682 ~ 71799947 (-) True G1323723
TU1511196 lncRNA upstream 34159 71818733 ~ 71819419 (-) True G1323778
TU1511202 lncRNA upstream 39817 71824391 ~ 71825994 (-) True G1323783
TU1511254 lncRNA upstream 148978 71933552 ~ 71933947 (-) True G1323830
XM_036945221.1 mRNA downstream 48079 71687880 ~ 71734443 (-) True LOC110490714
XM_036945229.1 mRNA downstream 48080 71687880 ~ 71734442 (-) False LOC110490714
XM_036945230.1 mRNA downstream 48082 71687880 ~ 71734440 (-) False LOC110490714
XM_036945231.1 mRNA downstream 48082 71687880 ~ 71734440 (-) False LOC110490714
XM_036945222.1 mRNA downstream 48107 71687880 ~ 71734415 (-) False LOC110490714
XM_036945235.1 mRNA upstream 57151 71841725 ~ 71923263 (-) False LOC118938840
XM_036945236.1 mRNA upstream 200154 71984728 ~ 72017048 (-) True LOC110490787
XM_036945238.1 mRNA upstream 238243 72022817 ~ 72143317 (-) False LOC110500989
XM_036945244.1 mRNA upstream 238243 72022817 ~ 72150984 (-) False LOC110500989
XM_036945245.1 mRNA upstream 238243 72022817 ~ 72150984 (-) False LOC110500989
TU1510608 other downstream 544676 71202500 ~ 71237846 (-) False G1323296
TU1510607 other downstream 544676 71202740 ~ 71237846 (-) True G1323296
TU1510499 other downstream 743000 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 1237302 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 1245383 70536452 ~ 70537139 (-) True G1323036
TU1511211 other upstream 72709 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 263390 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 272529 72057103 ~ 72150937 (-) True LOC110500989
TU1512083 other upstream 380059 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 455974 72240548 ~ 72260352 (-) False G1324464

Expression Profile