RNA id: TU1512016


Basic Information

Item Value
RNA id TU1512016
length 681
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1324378
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72020935 ~ 72021763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGACTGCAGGCGGTGCAAAACCAGAGAACCCTTCAGCACGGTTAATAGTGCCTTTGTGGAGAACAGCCTGAGTTCTAGATTCATACCCATACACATCCCCTCAACCACATAGCAGAACTGAGGTTCTAATACACAGAGCAGAACCTGGTTCCAATAGACAGAGCAGAACCGGTTCCAATACACAGAGCAGAACCTGGTTCCAATACACAGAGCAGAACCTGGTTCCAATACTCAGAGCAGAACCGGTTCCAATACACAGAGCAGAACCTGGTTCCAATACTCAGAGCAGAACCGGTTCCAATACACAGAGCAGAACCTGGTTCTAAAACACAAAGCAGAACCCGGTTCCAATACACAGAGCAGAACCTGTTTCTAAAACACAAAGCAGAACCGGTTCCAATACGCAGAAATAGAATGACATTCATTCCATCATTCTGTTTCTATGGTTCCAATCCGGTACAGTTGTCATGGGTCCATGTATAGACCCAGCCATGAGAGATTATTTACTAACCTAaagaaatgaatcactaaccaaCACCACAGGAGAATAGTCTATCATCATCCATGGTCTCGTCTCTCCCCTCAGCGTCACACCTAGAGGAAGGGCTACGGACCAGACCAGCAGCACTAAACTAAACTACTGCCAACCTATGGTGCACCTGACATGGCACCCTTtccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512011 lncRNA downstream 693 71970735 ~ 72020242 (-) True G1324376
TU1512046 lncRNA downstream 37563 71982116 ~ 71983372 (-) False G1324401
TU1512048 lncRNA downstream 37563 71982116 ~ 71983372 (-) False G1324401
TU1512044 lncRNA downstream 37833 71982116 ~ 71983102 (-) False G1324401
TU1512047 lncRNA downstream 37833 71982116 ~ 71983102 (-) False G1324401
TU1512092 lncRNA upstream 82064 72103827 ~ 72107185 (-) True G1324437
TU1512118 lncRNA upstream 131801 72153564 ~ 72153857 (-) True G1324461
TU1512120 lncRNA upstream 132532 72154295 ~ 72154513 (-) True G1324463
TU1512147 lncRNA upstream 133488 72155251 ~ 72156144 (-) False G1324466
TU1512149 lncRNA upstream 133488 72155251 ~ 72156144 (-) False G1324466
XM_036945236.1 mRNA downstream 3887 71984728 ~ 72017048 (-) True LOC110490787
XM_036945235.1 mRNA downstream 97672 71841725 ~ 71923263 (-) False LOC118938840
XM_036945221.1 mRNA downstream 286492 71687880 ~ 71734443 (-) True LOC110490714
XM_036945229.1 mRNA downstream 286493 71687880 ~ 71734442 (-) False LOC110490714
XM_036945230.1 mRNA downstream 286495 71687880 ~ 71734440 (-) False LOC110490714
XM_036945238.1 mRNA upstream 1054 72022817 ~ 72143317 (-) False LOC110500989
XM_036945244.1 mRNA upstream 1054 72022817 ~ 72150984 (-) False LOC110500989
XM_036945245.1 mRNA upstream 1054 72022817 ~ 72150984 (-) False LOC110500989
XM_036945239.1 mRNA upstream 1054 72022817 ~ 72150986 (-) False LOC110500989
XM_036945243.1 mRNA upstream 1054 72022817 ~ 72150988 (-) False LOC110500989
TU1511211 other downstream 98027 71857283 ~ 71922908 (-) True LOC118938840
TU1510608 other downstream 783089 71202500 ~ 71237846 (-) False G1323296
TU1510607 other downstream 783089 71202740 ~ 71237846 (-) True G1323296
TU1510499 other downstream 981413 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 1475715 70543356 ~ 70545220 (-) True LOC110490645
TU1512018 other upstream 26201 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 35340 72057103 ~ 72150937 (-) True LOC110500989
TU1512083 other upstream 142870 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 218785 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 313597 72335360 ~ 72336984 (-) False G1324512

Expression Profile