RNA id: TU1512177


Basic Information

Item Value
RNA id TU1512177
length 230
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G1324487
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72201515 ~ 72201744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGTGTTCACCTGTCTCATCAGTTCCTCCCGCGTCCTCCCGCTCCGAACTGCCATTGCCACTATAATTGAGTTGTAAACTCATTGTCCCTTACAAGATTTTTTGGTTACCATTTTTTTTCCATTGTTAATTATGTTCAGAAAATTAGGTCCAATACTTTCCTATTGGCAATTCGGCCACTATCTCTCGCCCGATGATGCGCAGTAGTTCTGCGCAGCAGCAACAAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512172 lncRNA downstream 8097 72193077 ~ 72193418 (-) True G1324484
TU1512170 lncRNA downstream 19342 72181695 ~ 72182173 (-) True G1324482
TU1512082 lncRNA downstream 37078 72164009 ~ 72164437 (-) False LOC110490626
TU1512080 lncRNA downstream 37870 72162810 ~ 72163645 (-) False LOC110490626
TU1512157 lncRNA downstream 40120 72161077 ~ 72161395 (-) True G1324469
TU1512179 lncRNA upstream 2120 72203864 ~ 72205733 (-) True G1324489
TU1512186 lncRNA upstream 30327 72232071 ~ 72250594 (-) True G1324495
TU1512188 lncRNA upstream 31049 72232793 ~ 72234586 (-) False G1324497
TU1512189 lncRNA upstream 31049 72232793 ~ 72234586 (-) True G1324497
TU1512192 lncRNA upstream 33863 72235607 ~ 72260832 (-) True G1324499
XM_036945251.1 mRNA downstream 8706 72162661 ~ 72192809 (-) False LOC110490626
XM_036945252.1 mRNA downstream 10208 72162661 ~ 72191307 (-) False LOC110490626
XM_036945246.1 mRNA downstream 50519 72027931 ~ 72150996 (-) False LOC110500989
XM_036945241.1 mRNA downstream 50525 72022817 ~ 72150990 (-) False LOC110500989
XM_036945247.1 mRNA downstream 50526 72022817 ~ 72150989 (-) False LOC110500989
XM_021576856.2 mRNA upstream 9232 72210976 ~ 72225125 (-) False LOC110499794
XM_021576858.2 mRNA upstream 9232 72210976 ~ 72225125 (-) False LOC110499794
XM_036945255.1 mRNA upstream 9232 72210976 ~ 72225125 (-) False LOC110499794
XR_005036205.1 mRNA upstream 9232 72210976 ~ 72225125 (-) False LOC110499794
XR_005036206.1 mRNA upstream 9232 72210976 ~ 72225125 (-) False LOC110499794
TU1512083 other downstream 33357 72164633 ~ 72168158 (-) True LOC110490626
TU1512017 other downstream 50578 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 151344 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 278607 71857283 ~ 71922908 (-) True LOC118938840
TU1510607 other downstream 963669 71202740 ~ 71237846 (-) True G1323296
TU1512124 other upstream 38804 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 133616 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 133616 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 205677 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 278661 72480405 ~ 72481169 (-) False G1324604

Expression Profile