RNA id: TU1512190



Basic Information


Item Value
RNA id TU1512190
length 622
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1324498
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72236065 ~ 72261291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGCCTATACCCATAACATCACTTACGCCACATCTCACAAACAGAATGCTACTCTGTATGTATAAAACCCACCTGTGTCACTCAAGATAACcagaagagggtgccattttgaaGAATCAAGAAATCCCATTTTGAAGATTTTAATGTGTAATTTACAGACAGTCAATCACTTATCACCAAGGTCAGGCATCAGTCAATGATGGCACTGTGAAACTCACTGAAACACCTCGAGGCAGCGCTCTTAGCGCTGTTCGTCTGCAGACATAACAACTGTCTTGTGAAATAAAAAGGGATTTAAAAGTTGTTTGTATTAGTCAACGGTGGAGTCGGCTTGCAGTTTCAAAATGGTGGTACCTTTCTTTATGTCTACATTTCCAAGTAACTGTTCAGGCTGACCAGTACAGTACACAACTATTCACACAAGGTGAGGCTGACCAGTTAGGGCTGATCGGGTCATTAAGCCATAAACAGTAAAAAACAATGGAAAACAATGGAAAAAGATTGTTCTCATTGTCAGCAGAAAACCATCTTTAATAGAAGGCCTGTGTGGCTGAAAGCGCTGAACTGAGCTTTTAGAATTTGAGCAATTCCAGTggcggctggtgggaggagctacaggagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1512188 lncRNA downstream 1479 72232793 ~ 72234586 (-) False G1324497
TU1512189 lncRNA downstream 1479 72232793 ~ 72234586 (-) True G1324497
TU1512179 lncRNA downstream 30332 72203864 ~ 72205733 (-) True G1324489
TU1512177 lncRNA downstream 34321 72201515 ~ 72201744 (-) True G1324487
TU1512172 lncRNA downstream 42647 72193077 ~ 72193418 (-) True G1324484
TU1512143 lncRNA upstream 3716 72240441 ~ 72255872 (-) True G1324465
TU1512126 lncRNA upstream 3823 72240548 ~ 72260352 (-) False G1324464
TU1512132 lncRNA upstream 3823 72240548 ~ 72260352 (-) False G1324464
TU1512137 lncRNA upstream 4554 72241279 ~ 72260352 (-) False G1324464
TU1512128 lncRNA upstream 9446 72246171 ~ 72260352 (-) False G1324464
XR_005036211.1 mRNA downstream 10940 72210976 ~ 72225125 (-) False LOC110499794
XM_036945261.1 mRNA upstream 28965 72265690 ~ 72269495 (-) True LOC110499807
XM_036945262.1 mRNA upstream 34453 72271178 ~ 72281002 (-) True LOC110490622
XM_036945265.1 mRNA upstream 70141 72306866 ~ 72315124 (-) False LOC110490625
XM_036945266.1 mRNA upstream 70141 72306866 ~ 72315261 (-) True LOC110490625
XM_036945275.1 mRNA upstream 184844 72421569 ~ 72426957 (-) True fgl2a
TU1512083 other downstream 67907 72164633 ~ 72168158 (-) True LOC110490626
TU1512017 other downstream 85128 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 185894 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 313157 71857283 ~ 71922908 (-) True LOC118938840
TU1510607 other downstream 998219 71202740 ~ 71237846 (-) True G1323296
TU1512124 other upstream 3823 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 98635 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 98635 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 170696 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 243680 72480405 ~ 72481169 (-) False G1324604

Expression Profile