RNA id: TU1512126


Basic Information

Item Value
RNA id TU1512126
length 3382
lncRNA type read_through
GC content 0.43
exon number 5
gene id G1324464
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72240548 ~ 72260352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcttcaaacgatcatctttatttaataagAATTGCAATAATGAAGCTGGTCGACCCCACACACTTGAGTGTAAGGCAGAGAGCTCAACGGTACAGAAAAAACAAAGGTCCTATATAGCAGACCTAAAAATGCTTAGTCATGGCTGGTTCCACCCCTCCCATGCAGATTTGGGGCATCATAAGCTAACTTGGGTTCATCTTGTGGTTATGTTCACCGGGTGTTGTTAGACTGTACCCTGGCTTAGATTCTCAGAAACAAAAAGTATTAGAAACAATAGGGGTTTGTTTTGTTTCTCAGGCTCTCTCGATCTCGGCTCACACCATGTCCTTGACTATACCCACAGACCAGCTGCAGGGAGCTAGAGGGGAACCATCCCTTTACAGAAGCACAGCATTTGTAGTTATGAAAATCTCTTACTATTGTTAAGCATATAATTCAACAATCAATGTTCAACAAAGCAGGTAAATACGTAATATTTCCCTTACAGTTTTCACACATCAAAGTTTCTGTAGATTGTTAAACAGGATGTCACATACTGCAGTTGCACCCAAACGGCTCTTATCTGTATGCCCAGACCCATGACTAAGTCACACAAGACAAGCCTATACTAAAATATAACAATGGATAATTTTCCAAGTAAAAACAGCATAGTATCTTCAATTAAACAACATGGTAGTTAATTCAATCATTTCCTCTAtaatggttacataagacaggttTCTTAAGGCAAAAtctaaagtagggtggttggtcggggtggataaGTGGGCATATAAcatgaacgtctagcaaccccaaggttgcgtgtttgaatctcatcacagaaAACTTTAGCAACTTTGCAATTACTTTTTAGCTACGTTGCAACTACTTATCaagttagctaacccttcccctaacccgtttagctaacccttcccctaacccgtgtagctaacccttcccctaacccatgTAGCTAACCCTTcccctaacccgtttagctaacccttcccctaacccttcccctaacccttttagctaacccttcccctaacccttttagctaacccttcccctaacccttttagctaatccttcccctaacccgtttagctaacccttttagctaacccttcccctaaccttaacccctagagCTAGTTAGCGTTATCCATTTAGCTGTTAGCaacaacaaattgtaattcgtGACATATGATACGTTTGACAAATTCGAAACATATCGTGTGAATTGTTATTCATaatatatcatacaaaatggataatGGACATCCCCAAATAAAGATACAATACATATCATAGTAAATGGAGTGTTTTGGATTATATACGCACAAAacaatacgaaatgctctgagaccatgttgagaaaaccaggcacagaatcatgctatggggatgtttttcagcggcatggactgggagactggcaaggacagagggaacaatgaatgacaatgaatgaccccaagcatacagctaAAGCAATACTGGAATGACTAAAGaacaagtccttgagtggcccagccaaagcccagacttgaacccattgaaaatctgtggattgaaggacttgaagattgctgtttttcacctctccccatcttatttaacagagcttgagaacagaacagagcgtgAGAAaaggaagaatgagagaaaaaacaaatccagatgtgcaaagctgatacaaaCAAACCCAAGACAAAGCAAatctgtaatcgctgcccaaggtgcttctacaagtatagactcaggggtgtaaatacttatgcaaatttgatttctgtatttaattttcaatacatttgcaaaacatttttcTATGGATTGATATGTAGCCTACATTGGGCCTTTATGATATCCTTTACAAATCAAACTACattgtattggtcacgtacacatatttatcagatgtatgtgagtgagtagtgaaatgcttgtgttccagttccaacagtgcagtaatatctccTTTCTGTAATGTTTCCTTTCTTTCTGTCACCAAATGTTTTCATAATATTAAAGTTACCAGGTTATTAGGGCCATACTGGCCAAACATTTTGTTCTTATATTTATATGATAATAGAGATGTGTGGACATGTGTATTCATATTTAGAAGCAATGTGGAAAGCATTATCGTTGTGGTTTTGGAAGAATCTGTTGAGTTCATGCTGAGACAAACCAAAAAGGAAAATCCCTACACAcaccactcagacagacagacagacagacacacacaccacacagacagacagacagacagacacacagacacacacacaccacacagacagacagacagacagacacacacaccacacagacagacagacagacacacacacacacaccacacagacagacagacacacagacacacacacaccacacagacagacagacagacagacagacacacacaccacacagacagacagacagacagacacacacaccacacagacagacagacagacagacagacacacacacaccacacagacagacagacagacagacacacacaccacacagacagacagacagacagacacacacaccacacagacagacaaacagacagacacacgcacacacactaatgaAACTCAGCTGTAAATCAACATCTGTCTTGACTTAATGTGTGTTTTCCTGGATAACAATACTCTGATTCATAGCAGTTCACTGGAAACGGTTAAAATCTATTCAGTCTCCACAGAATCTTATGACTTTATATGGGTGAATCAGAGAGGACTTTGAGAGTGAAGAGCAGGACACAGAGGCTTTAGTTCTGAACTATACAttctttaaaaataaaacactgagATTCCCAAAGGCAGGTCATCTCCAAATCAAGCTTTAACATAGAGTAGATTTGTGTCACTATGGCAGTATGATTTCTGCCACTAGTGGCTGTGTGTGTAGCTGGTCGACGGGCCCCAGTGTCAGCGCCCCTTGTAGACCGAGTCTCTGCTCTGCACTCAGCGCCGGAGTCTCGTAGTGGACACGCAGCCATGGCTGCCCTTTCTCCACCTTCTGTCCCAAAGACACCAGAAGCTCCGCCCCCACACTGTGATTGACAGGGTCTCCGGCCTTCGAACGTCCCGCCCCCAACCTGTGCAGCACCTGAGCAATGACCATGCCGTCTATGTCCAGCACTGTCCcATGGCCCTGTGTCTCCAGTTCTGTTTGGTAGTGTGCCCGTCTCAGGATGCTGTAGTAGTCTGCGTTGGTTGAACAGAGTGATGCAGCGATCTGACTGGCTACTCCCTGACCAATCATCATGTTCTGGAACTTTTCCAGGGCTGCACCATTCTGCAGGGTTGTAGAGATCACCTTTTTACCCTCATCCAGGCTCCCTGCACGACCAATCATCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512190 lncRNA downstream 3823 72236065 ~ 72236725 (-) False G1324498
TU1512188 lncRNA downstream 5962 72232793 ~ 72234586 (-) False G1324497
TU1512189 lncRNA downstream 5962 72232793 ~ 72234586 (-) True G1324497
TU1512179 lncRNA downstream 34815 72203864 ~ 72205733 (-) True G1324489
TU1512177 lncRNA downstream 38804 72201515 ~ 72201744 (-) True G1324487
TU1512195 lncRNA upstream 1638 72261990 ~ 72262476 (-) True G1324502
TU1512249 lncRNA upstream 85679 72346031 ~ 72347252 (-) True G1324541
TU1512262 lncRNA upstream 101861 72362213 ~ 72362977 (-) True G1324550
TU1512270 lncRNA upstream 121617 72381969 ~ 72382259 (-) True G1324558
TU1512272 lncRNA upstream 128938 72389290 ~ 72389526 (-) True G1324560
XR_005036211.1 mRNA downstream 15423 72210976 ~ 72225125 (-) False LOC110499794
XM_036945261.1 mRNA upstream 5338 72265690 ~ 72269495 (-) True LOC110499807
XM_036945262.1 mRNA upstream 10826 72271178 ~ 72281002 (-) True LOC110490622
XM_036945265.1 mRNA upstream 46514 72306866 ~ 72315124 (-) False LOC110490625
XM_036945266.1 mRNA upstream 46514 72306866 ~ 72315261 (-) True LOC110490625
XM_036945275.1 mRNA upstream 161217 72421569 ~ 72426957 (-) True fgl2a
TU1512083 other downstream 72390 72164633 ~ 72168158 (-) True LOC110490626
TU1512017 other downstream 89611 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 190377 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 317640 71857283 ~ 71922908 (-) True LOC118938840
TU1510607 other downstream 1002702 71202740 ~ 71237846 (-) True G1323296
TU1512208 other upstream 75008 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 75008 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 147069 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 220053 72480405 ~ 72481169 (-) False G1324604
TU1512326 other upstream 220053 72480405 ~ 72481169 (-) False G1324604

Expression Profile