RNA id: TU1512281


Basic Information

Item Value
RNA id TU1512281
length 265
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1324568
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72406895 ~ 72407159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatatattcttattccattcctttacttagatttgggtgtattaggtagttgttgtggaattgttagattacctgtagatattactgcactgtcagaactagaagcataagcatttcgctacactcgcaataacatctgcttaaccgtgtgtatgtgaccaagaaaatgttcaaatgtttttAAATAGACATTCGCAGGCAGTGATcttcagactctctcctcagatAGCAGAACATCAGATAATTGGACAGCTTGACTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512277 lncRNA downstream 10205 72396365 ~ 72396690 (-) True G1324565
TU1512273 lncRNA downstream 15776 72390119 ~ 72391119 (-) True G1324561
TU1512272 lncRNA downstream 17369 72389290 ~ 72389526 (-) True G1324560
TU1512270 lncRNA downstream 24636 72381969 ~ 72382259 (-) True G1324558
TU1512262 lncRNA downstream 43918 72362213 ~ 72362977 (-) True G1324550
TU1512320 lncRNA upstream 73246 72480405 ~ 72481169 (-) False G1324604
TU1512325 lncRNA upstream 73246 72480405 ~ 72481169 (-) False G1324604
TU1512330 lncRNA upstream 73246 72480405 ~ 72481169 (-) True G1324604
TU1512331 lncRNA upstream 74052 72481211 ~ 72481462 (-) True G1324605
TU1512332 lncRNA upstream 78213 72485372 ~ 72497281 (-) True G1324606
XM_036945266.1 mRNA downstream 91634 72306866 ~ 72315261 (-) True LOC110490625
XM_036945265.1 mRNA downstream 91771 72306866 ~ 72315124 (-) False LOC110490625
XM_036945262.1 mRNA downstream 125893 72271178 ~ 72281002 (-) True LOC110490622
XM_036945261.1 mRNA downstream 137400 72265690 ~ 72269495 (-) True LOC110499807
XR_005036215.1 mRNA downstream 181770 72210976 ~ 72225125 (-) True LOC110499794
XM_036945275.1 mRNA upstream 14410 72421569 ~ 72426957 (-) True fgl2a
XM_036945280.1 mRNA upstream 74780 72481939 ~ 72493287 (-) False LOC110531900
XM_036945277.1 mRNA upstream 93255 72500414 ~ 72533129 (-) False LOC110531910
XM_036945276.1 mRNA upstream 93255 72500414 ~ 72533130 (-) False LOC110531910
XM_036945279.1 mRNA upstream 105859 72513018 ~ 72533138 (-) False LOC110531910
TU1512208 other downstream 69911 72335360 ~ 72336984 (-) False G1324512
TU1512209 other downstream 69911 72335360 ~ 72336984 (-) True G1324512
TU1512124 other downstream 146543 72240548 ~ 72260352 (-) False G1324464
TU1512083 other downstream 238737 72164633 ~ 72168158 (-) True LOC110490626
TU1512017 other downstream 255958 72057103 ~ 72150937 (-) True LOC110500989
TU1512282 other upstream 262 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 73246 72480405 ~ 72481169 (-) False G1324604
TU1512326 other upstream 73246 72480405 ~ 72481169 (-) False G1324604
TU1512327 other upstream 73246 72480405 ~ 72481169 (-) False G1324604
TU1512300 other upstream 74781 72481940 ~ 72483428 (-) True LOC110531900

Expression Profile