RNA id: TU1512377


Basic Information

Item Value
RNA id TU1512377
length 934
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1324646
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72590029 ~ 72591064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTAGAGAAGAGGTTAGTGTCCTGTAAgatgtcctccatgttgttcaggtagagaagaggttagtgtcctccatgttgttcaggtagagaagaggttagtgtcctccatgttgttcaggtagagaagaggttagtgtcctccatgttgttcaggtagagaagaggttagtgtcctccatgttgttcaggtagagaagagggggggggggggggggggggggggggggggggcttggatgCTATGTTGTGGGGAAGAAGGGCCAagaggatgtgtgtgttgtgagagGCTGTGGTCAGAGTTTATTTGTCCAGTCCACTCAGAGCTCCTCTGGCCTGTAGCATTAATGTGATCCTGTCCAGTAATATCCATCTATCCCCCTGACTGTAAGAACCAttagagaggacacacacagcacactagacacacagcacagtacactacacacacagcacacagcacactacacacagtacactacacactacacacagcatTACATACAGGGCAGTATGTCTTTATAGCGGTTCTTCTTCACATTCCCTTCCTGCTCCCCGACGTTGGTGGGGTAGATCTTCTCTGTCCTGTATTTGGTCGATAATCTTCGTAATCTCTGCAGGGAGAAAAAACAACAAGAGAGAAAATGTTATTCattctgtgtttttctgtctccTAAAGAAAGACATGTTGTAGAGAAGGAATACCCAACAacaccctatttcctttatagtgcactacttttgaccagagtcctataaagggaatagggaaccatttatagtgccctacttttgaccagagtcctatgaagggaatagggaaccatttatagtgcactacttttgaccagagtcctataaagggaatagggaaccatttaTAGTGTACCacctttgaccagagtcctatgaagggaatagggaaccatttatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512351 lncRNA downstream 35669 72553906 ~ 72554360 (-) True G1324620
TU1512334 lncRNA downstream 61394 72528325 ~ 72528635 (-) True G1324608
TU1512303 lncRNA downstream 61876 72527048 ~ 72528153 (-) False LOC110531910
TU1512332 lncRNA downstream 92748 72485372 ~ 72497281 (-) True G1324606
TU1512331 lncRNA downstream 108567 72481211 ~ 72481462 (-) True G1324605
TU1512344 lncRNA upstream 7879 72598943 ~ 72599533 (-) True G1324616
TU1512395 lncRNA upstream 21498 72612562 ~ 72613167 (-) True G1324656
TU1512397 lncRNA upstream 23344 72614408 ~ 72614907 (-) True G1324658
TU1512402 lncRNA upstream 32476 72623540 ~ 72623863 (-) True G1324661
TU1512403 lncRNA upstream 34879 72625943 ~ 72627356 (-) True G1324662
XM_036945279.1 mRNA downstream 56891 72513018 ~ 72533138 (-) False LOC110531910
XM_036945276.1 mRNA downstream 56899 72500414 ~ 72533130 (-) False LOC110531910
XM_036945277.1 mRNA downstream 56900 72500414 ~ 72533129 (-) False LOC110531910
XM_036945280.1 mRNA downstream 96742 72481939 ~ 72493287 (-) False LOC110531900
XM_036945275.1 mRNA downstream 163072 72421569 ~ 72426957 (-) True fgl2a
XR_005036217.1 mRNA upstream 598 72591662 ~ 72592173 (-) True LOC118938847
XM_021576788.2 mRNA upstream 143952 72735016 ~ 72737438 (-) True LOC110499730
XM_036945315.1 mRNA upstream 263958 72855022 ~ 72896464 (-) False LOC110490677
XM_036945312.1 mRNA upstream 263958 72855022 ~ 72899308 (-) False LOC110490677
XM_036945313.1 mRNA upstream 263958 72855022 ~ 72915316 (-) False LOC110490677
TU1512298 other downstream 57014 72529054 ~ 72533015 (-) True LOC110531910
TU1512302 other downstream 67851 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 106601 72481940 ~ 72483428 (-) True LOC110531900
TU1512326 other downstream 108860 72480405 ~ 72481169 (-) False G1324604
TU1512583 other upstream 314385 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 1084274 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 1143617 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1411383 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 1577079 74168143 ~ 74212866 (-) True LOC110513406

Expression Profile