RNA id: TU1512583



Basic Information


Item Value
RNA id TU1512583
length 743
RNA type TUCP
GC content 0.46
exon number 2
gene id G1324805
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72905449 ~ 72906351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagtctgtacatagtcaaagctttccttcagtcacagtggtcaggtatccTGCCAAGTAGCATTCCAgcttgctctgttttttggtaaattctttccaatgtgtcaagtaattatctttttgttttctcaggaTTTAGTTgggtcttctgtctctctctctttctgtctctgtgtctctctctttctccaccatctctctgtgtctctctctttctccaccatctctctctgtctctctctttctccaccatctctgtgtctctctctttctccaccatctctctgtgtctctctctttctccaccttctctctgtgtctctctctttctccaccatctctctgtgtctctctctttctccaccatctctctgtctctctctttctccaccatctctctgtctctctctttctccaccatctctctgtctctctctctctccaccatctctctgtgtctctctctttctccaccatctctttctctctctttctccaccttctctctgtgtctctctctttctccaccttctctctgtgtctctctctttctccaccttctctctgtgtctctctctttctccaccttctctctgtgtctctctctttctccaccatctctctgtctctctctttctccaccatctctctgtctctctttctccaccatctctgtgtctctctctttctccaccttctctctgtgtctctctcgctccctataTCTTTCTGTCtactctcgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1512569 lncRNA downstream 30139 72874683 ~ 72875310 (-) True G1324794
TU1512565 lncRNA downstream 32074 72872879 ~ 72873375 (-) True G1324793
TU1512562 lncRNA downstream 32879 72872231 ~ 72872570 (-) True G1324792
TU1512559 lncRNA downstream 35620 72869308 ~ 72869829 (-) True G1324790
TU1512504 lncRNA downstream 81556 72785464 ~ 72823893 (-) True G1324749
TU1512590 lncRNA upstream 6926 72913277 ~ 72914226 (-) False LOC118938848
TU1512591 lncRNA upstream 6926 72913277 ~ 72914226 (-) True LOC118938848
TU1512594 lncRNA upstream 10677 72917028 ~ 72918638 (-) True G1324812
TU1512605 lncRNA upstream 35986 72942337 ~ 72942639 (-) True G1324823
TU1512610 lncRNA upstream 42814 72949165 ~ 72949371 (-) True G1324828
XM_036945312.1 mRNA downstream 6141 72855022 ~ 72899308 (-) False LOC110490677
XM_036945315.1 mRNA downstream 8985 72855022 ~ 72896464 (-) False LOC110490677
XM_021576788.2 mRNA downstream 168011 72735016 ~ 72737438 (-) True LOC110499730
XR_005036217.1 mRNA downstream 313276 72591662 ~ 72592173 (-) True LOC118938847
XM_036945279.1 mRNA downstream 372311 72513018 ~ 72533138 (-) False LOC110531910
XR_005036229.1 mRNA upstream 3753 72910104 ~ 72914835 (-) False LOC118938848
XM_036945327.1 mRNA upstream 52865 72959216 ~ 73044899 (-) False LOC110490803
XM_036945326.1 mRNA upstream 52865 72959216 ~ 73045482 (-) False LOC110490803
XM_036945317.1 mRNA upstream 52865 72959216 ~ 73142970 (-) False LOC110490803
XM_036945318.1 mRNA upstream 52865 72959216 ~ 73142970 (-) False LOC110490803
TU1512298 other downstream 372434 72529054 ~ 72533015 (-) True LOC110531910
TU1512302 other downstream 383271 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 422021 72481940 ~ 72483428 (-) True LOC110531900
TU1512319 other downstream 424280 72480405 ~ 72481169 (-) False G1324604
TU1513944 other upstream 768987 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 828330 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1096096 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 1261792 74168143 ~ 74212866 (-) True LOC110513406
TU1514163 other upstream 1319065 74225416 ~ 74234814 (-) True LOC110511321

Expression Profile