RNA id: TU1513143


Basic Information

Item Value
RNA id TU1513143
length 1198
lncRNA type intronic
GC content 0.39
exon number 4
gene id G1325181
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 73394160 ~ 73395588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAATTGTGTCAACTTACAGTATGAATTTAATTAAACCGCTGGATGTTTTGGCACAAAGGCTTCGCAGAAGAAAAACAAACGGAAAAAAAGTTGAGTGGAAAAAAAGTGAGAAGAAATTTGATAATGAATTTTTCTGCCCTGGTGCAGTTCAAACTACTACAGCTGATTCCCAAGAAGAAACAAAACCAGAGTTTGGCCGGTTTATTGTTTTAAATAATGTTCAGACATGTTTAGACAGATGTCCTAaattccatcccaaatggcaccctattccctatgtagtgcactgaagtgccatagggttctggtcaaaaaaGTAGTCCACAGTAAaggatatagggtgccatttgggattgatACTTGGTCTGTGATGCTGATAGTCAGAGGTGTTTTAATGTGAATAGTTTCATAGTTGAGAAAAGGAAAGGGCTGTCTTAGTAACGGGCTCTCACACTGTAAACTGTTGGTTTGATCTGGTCTCAAACAGGGTTGACTCATGCcctactgatctctctctctctctctctctctctctctctctctctctctgtggtttaACCAGCTGTAACAGTTCAGAAGTTATTCTTTCTGGACTTCACTAAGGGTTTTTTCAGTTGTTCGGGGACACAAAAAAAAATTATTGAGTcaagccgaagtctacgccccttcgtcagTGATTCTTCAATAGGGATTCTTCAGTAGTGATTCTtcagtagggattcttcagtaGTGATTCTtcagtagggattcttcagtaGTGATTCTTCAGTAGGGATTCTTCAGTAGTGATTCTTCAGTAGTGATTCTTCAGTAGGGATCCTTCAGTAGTGATTCTtcagtagggattcttcagtaGTGATTCTtcagtagggattcttcagtaGGGATTCTtcagtagggattcttcagtaGTGATTCTTCAGTAGTGATTCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATTCAGTAATGATTCTTCAGTAGTGATTCTTCAATAGGGATTATACACTCTTCAATAGGGATTATTCAGTAGTGATTCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATACAATCTTCAGTAGGGATTATACACTCTTCAGTAGGGATTATTCAGTAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1513095 lncRNA downstream 81199 73312452 ~ 73312961 (-) True G1325146
TU1513086 lncRNA downstream 91509 73300044 ~ 73302651 (-) True G1325138
TU1513075 lncRNA downstream 109445 73284056 ~ 73284715 (-) True G1325132
TU1512901 lncRNA downstream 135863 73258013 ~ 73258297 (-) True G1324994
TU1512894 lncRNA downstream 139502 73252461 ~ 73254658 (-) False G1324988
TU1513148 lncRNA upstream 7665 73403253 ~ 73405296 (-) True G1325186
TU1513159 lncRNA upstream 32287 73427875 ~ 73428425 (-) True G1325197
TU1513161 lncRNA upstream 36851 73432439 ~ 73433812 (-) True G1325199
TU1513195 lncRNA upstream 128354 73523942 ~ 73524341 (-) True G1325227
TU1513201 lncRNA upstream 142888 73538476 ~ 73538955 (-) True G1325233
XM_036945594.1 mRNA downstream 55799 73337025 ~ 73338361 (-) True LOC118938934
XM_036945323.1 mRNA downstream 251190 72959216 ~ 73142970 (-) False LOC110490803
XM_036945343.1 mRNA upstream 488695 73884283 ~ 73890794 (-) False mgst1.1
XM_036945344.1 mRNA upstream 488695 73884283 ~ 73902038 (-) False mgst1.1
XM_036945345.1 mRNA upstream 488695 73884283 ~ 73902168 (-) True mgst1.1
XM_036945347.1 mRNA upstream 495330 73890918 ~ 73902062 (-) False LOC118938851
XM_036945346.1 mRNA upstream 495330 73890918 ~ 73902131 (-) True LOC118938851
TU1512583 other downstream 487809 72905449 ~ 72906351 (-) True G1324805
TU1512298 other downstream 861145 72529054 ~ 72533015 (-) True LOC110531910
TU1512302 other downstream 871982 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 910732 72481940 ~ 72483428 (-) True LOC110531900
TU1512327 other downstream 912991 72480405 ~ 72481169 (-) False G1324604
TU1513944 other upstream 279750 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 339093 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 606859 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 772555 74168143 ~ 74212866 (-) True LOC110513406
TU1514163 other upstream 829828 74225416 ~ 74234814 (-) True LOC110511321

Expression Profile