RNA id: TU1514172


Basic Information

Item Value
RNA id TU1514172
length 1339
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1325928
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 74215704 ~ 74217237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGTTTGCTGTATGTTGTACAAAATGAtgcacattttaaaaaataaaataaatgttttaatgaACCTGGTGCAGTCCTGTCCCCCCTGCAGCACTTATTGACCTGGTTGTGCCTTAACTTTGTGCtttaaaacaaacaacaacaacaacaaacaaacagctGTCTCTGCATTACTGGAGAATGTCTTGGGGTTTACTGTAGTGGTATAATCCCTGTTTGAAGGGACCGTGAGGTCAGAAAGAAAGAGCTTTATTACAAATGTGTGCTTTCTTGGAAAGTttggttctttttttttttcgttCTGGACAACACCTAGAATGGGGTGTTTTCATAGGTGTGTTTGTGTCCAACAATATGCTTTCCTGCCCCCCCCCACCAGAGTGtgtccccaaatggcaccctattccctatgtagtgcactacttttgactcgAGCCTTATGGTgaccagggtgccatttggggaccTACccagtatttttattttatttaaaaaaaaaaaacaagtccgGTTGTTGTTTGGGTAGTCAAACATGGgtagtttttaaaaaaaatgtttagatgctttctgcttttactctccTTCCCATTTACAGAATGACATTTTTACATTCAAACAGTTGTATTCCACTGCACAGAGCTGAATATGTACAAAATAAACAACGTTCAAAATGGAAGCCagtttgtttttttttgctgacTGTACTTTCCTGTGTGGTGCATCATGGGTAATGGTGatctttttaaaaatatttttttttgtaataattgTCACCAGCCTGATGGTGAATACCAGTGATGCACCCGAAGGTTGTTTTTCTTCCTGAGAAATGAAATGAGACTGTATAAAGTGAGTGGATGTACATGTTTGGTCTGTGTGTGCGGCTTTTTCCAAAAATATCACAGTTTTTAAAAGGATTTCGGTGTGTTCTGCTTATTCTCTCTTAATTCCGGCTATCTTCCAACCGACATTTCTGGGGAATTTGGGTAAAGTTTCCAGAATTTTCTAAACCCATCTGTGTGGCACTTCTCTACGGTCCAAGGTGACGCTGCTTCAACTACCAGCTGCTCCCCTCCTTAAATTACGTTTCTTTCTCTCGTTTATGTAAATGTTGTACATTTTTATATTTGTAATgtgtactattattattattattattattattattattattattattatatgcagAAGATGTTTAATTCCTATTGTATCGTTCACATTGACCTATCACGACCCCCCCCTCAAGTCACATGACGCTAAAGTTGTCCAATAATGTCCAGACATTTTAAAAGGTTCAGATGTTTTTAATGTAATTGGTCACTTTAATtgtcttgtaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1514177 lncRNA downstream 20128 74166772 ~ 74195576 (-) True G1325933
TU1514209 lncRNA downstream 27894 74187391 ~ 74187810 (-) True G1325958
TU1514202 lncRNA downstream 70364 74144721 ~ 74145340 (-) True G1325954
TU1514197 lncRNA downstream 73024 74142473 ~ 74142680 (-) True G1325953
TU1514121 lncRNA downstream 75623 74136696 ~ 74140081 (-) True G1325890
TU1514178 lncRNA upstream 410 74217647 ~ 74217881 (-) True G1325934
TU1514162 lncRNA upstream 2310 74219547 ~ 74220824 (-) False LOC110511321
TU1514218 lncRNA upstream 7268 74224505 ~ 74224868 (-) True G1325965
TU1514234 lncRNA upstream 57268 74274505 ~ 74275652 (-) True G1325980
TU1514240 lncRNA upstream 58736 74275973 ~ 74277724 (-) True G1325981
XM_036945355.1 mRNA downstream 2576 74167198 ~ 74213128 (-) False LOC110513406
XM_036945354.1 mRNA downstream 2577 74167198 ~ 74213127 (-) False LOC110513406
XM_036945356.1 mRNA downstream 2579 74167198 ~ 74213125 (-) False LOC110513406
XM_036945357.1 mRNA downstream 16915 74167198 ~ 74198789 (-) False LOC110513406
XM_036945349.1 mRNA downstream 230203 73974934 ~ 73985501 (-) False LOC110527628
XM_036945358.1 mRNA upstream 1665 74218902 ~ 74256009 (-) False LOC110511321
XM_036945364.1 mRNA upstream 140889 74358126 ~ 74374229 (-) True LOC110491887
XR_005036232.1 mRNA upstream 144362 74361599 ~ 74365992 (-) False LOC118938857
XR_005036234.1 mRNA upstream 144362 74361599 ~ 74366042 (-) False LOC118938857
XR_005036236.1 mRNA upstream 144381 74361618 ~ 74365992 (-) False LOC118938857
TU1514169 other downstream 2838 74168143 ~ 74212866 (-) True LOC110513406
TU1514093 other downstream 212955 74002447 ~ 74002749 (-) True G1325863
TU1513981 other downstream 480607 73734681 ~ 73735097 (-) True G1325780
TU1513944 other downstream 538051 73675338 ~ 73677653 (-) True G1325752
TU1512583 other downstream 1309353 72905449 ~ 72906351 (-) True G1324805
TU1514163 other upstream 8179 74225416 ~ 74234814 (-) True LOC110511321
TU1514158 other upstream 158064 74375301 ~ 74395568 (-) True G1325915
TU1514307 other upstream 388134 74605371 ~ 74607316 (-) True LOC118938855
TU1514360 other upstream 505352 74722589 ~ 74723400 (-) True G1326070
TU1514413 other upstream 555062 74772299 ~ 74773953 (-) True G1326095

Expression Profile