RNA id: TU1514781



Basic Information


Item Value
RNA id TU1514781
length 1238
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G1326370
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75294849 ~ 75297541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATAGAATAGGGGTTAGTTAATAATATATAGAATAGGGGTTAGACTgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgatcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgatcagcagcagtgatatattagactgagtagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagtgatatattagactgagcagcagcagtgatatattagactgagcagcagcagtgatatattagactgagctGATGAATAGGATGTTAATGTATAGCAGCAGTAGGGTACCAAGAAGAGGTATGATACCGGAGTCTGTTTACAGGTACGGACAGACCAGTAGGGTTTCCGTCCGAGAGTCACCCAAACTGACGTACTAATTTATACTCCACACATGGTGACATATTAACATGTGAGTCCTTTATAGCCTCAGCTGATTGGCACTGAACTTTCTCCCTGCTCGCCCAAAATACCTCCATCTCCGTCAAATCAAGATATACCAGGAGTTATTTAAGAGGGCTATTCTCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1514716 lncRNA downstream 17834 75276594 ~ 75277015 (-) True G1326325
TU1514639 lncRNA downstream 93598 75109614 ~ 75201251 (-) True G1326261
TU1514671 lncRNA downstream 136956 75157283 ~ 75157893 (-) True G1326283
TU1514668 lncRNA downstream 143486 75150581 ~ 75151363 (-) True G1326281
TU1514514 lncRNA downstream 221565 75069361 ~ 75073284 (-) True G1326174
TU1514788 lncRNA upstream 5946 75303487 ~ 75303857 (-) True G1326372
TU1514806 lncRNA upstream 49483 75347024 ~ 75347304 (-) True G1326387
TU1514810 lncRNA upstream 53401 75350942 ~ 75351303 (-) True G1326391
TU1514813 lncRNA upstream 60388 75357929 ~ 75359463 (-) True G1326394
TU1514815 lncRNA upstream 63426 75360967 ~ 75361930 (-) True G1326396
XR_005036325.1 mRNA downstream 102915 75190621 ~ 75191934 (-) True LOC118938932
XM_036945389.1 mRNA downstream 306518 74883029 ~ 74988331 (-) True LOC110490689
XM_036945390.1 mRNA downstream 379564 74883029 ~ 74915285 (-) False LOC110490689
XM_036945387.1 mRNA downstream 418530 74806009 ~ 74876319 (-) True LOC110514333
XM_036945386.1 mRNA downstream 418833 74806009 ~ 74876016 (-) False LOC110514333
XM_036945405.1 mRNA upstream 222760 75520301 ~ 75547039 (-) False LOC110518764
XM_036945404.1 mRNA upstream 239523 75537064 ~ 75546164 (-) False LOC110518764
XM_036945400.1 mRNA upstream 239523 75537064 ~ 75547039 (-) False LOC110518764
XM_036945401.1 mRNA upstream 239523 75537064 ~ 75547039 (-) False LOC110518764
XM_036945402.1 mRNA upstream 239523 75537064 ~ 75547039 (-) False LOC110518764
TU1514494 other downstream 241492 75052749 ~ 75053357 (-) True G1326164
TU1514413 other downstream 520896 74772299 ~ 74773953 (-) True G1326095
TU1514360 other downstream 571449 74722589 ~ 74723400 (-) True G1326070
TU1514307 other downstream 687533 74605371 ~ 74607316 (-) True LOC118938855
TU1514158 other downstream 899281 74375301 ~ 74395568 (-) True G1325915
TU1515635 other upstream 700965 75998506 ~ 75999000 (-) True G1326996
TU1516813 other upstream 2120780 77418321 ~ 77429149 (-) False LOC110515635
TU1516806 other upstream 2150727 77448268 ~ 77499704 (-) False LOC110515635
TU1516814 other upstream 2204479 77502020 ~ 77506774 (-) True LOC110515635
TU1517067 other upstream 2573738 77871279 ~ 77874604 (-) True G1328123

Expression Profile