RNA id: TU1514823


Basic Information

Item Value
RNA id TU1514823
length 1920
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1326399
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75369846 ~ 75382171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacattaaaacttgtttttattTAATAACATTTTCCCGGCCACAACAATAAAATTTAACAAATAATCACAAAAAAAAGTGTGACCTTCCATTAGCTGTACATTACATACACTATAGTAAAACTGACCGAGCTTAAAAACCCACTACAACATTCATGTAGTGCTTCCAGCAGCATTTCACCAGAGGCAAAGACATTATACATATGTACACAAATCCACATTGAACCCATCGCAAATTTCACATATGTACAGCGTACGTGGCTGTGGTAAAGAGTACTAACATCTATCAACGTTGTTGCTCGGTTCAagattctgttttttttttaacttccTTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGTAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTAGAGACTGTCTTCTAAAAGTTGTGTAGTAGAGCTCTCGAGACTGTCTTCTAAAAGTTGTGTAGTAGAACTCTCGAGAGAGTCAAGAGTTAAAATTCTTACAAgtagcaaaaaaaaaatatttttaaaaaaatgtcattttcaaaacatttacaatatagccaaaTGCCTGATTCTGCCACAGCTAAGTTACCTTACCGTGGAGCAGCACATTGGGCTGACTGACACACCGACTATAGACTGCAGATTGTGATAGGACAGTTGACACTGCACTGAAAAGAAGCTACTACATCCAACCGTGTGGAGCACACAGAGGTTTGGAGTTGTGCTACACCGTTCAGACAGCGGTGTAATAAAATAAACACTGTACTCCATCTCCCTACTTCCTTCTCAGCTGAAGACAAGCATTCtccagacagatagatagagatatagatagatatagctATGGCCCTTGAATGACCAAAAGTGGTTTGAGTGCCTCTTATTTTtctgagtaaaaaaaaaatgaggcAAAATCCACTGGCTTCATTTCCTCATAGCCACAAAACGTAGAAAGAAATGCACTTTGGTATGTAACCAAATGCCCTGGGTTATTCACATCACAATAAGAAGATATATCTATCACAACAGTCTGAGGTAaagattaaaatgtatttttgtccTTCTCTCCGGGAGTGATAAAATGAAGCTAACAGCTGTAACCCCTTGAATTGTTTTGATGTTAAGACAAGACAGAGGCTGTCAGTTGCTCAACCCTTTCAGAGCATAAGGTGATTGCTTCTTACTAAGCGTTCCCTGTTGGCAAAGGGTGTTtcccgaaatggcaccctattccctatatagtgcgctacttttgaccagagccctatcaaaagtagtgcactatatagggaaatagggtgccattgtggATGTGGCCCATGTAATACCTGTCGTTGTGCGGCCGCTTGGCTTTCTCCTCGCTACCACATCAGAGGTTAAGCCAGGAAGACTGTCTTTGGGCTTGAAGAAAACATCCATGAAAATGACTGTAAACATTTCACACATCTGTGAAATGGATGTATGTTCAGGGGAGATGTGCTGTAGGTAGGTGTATGTAGGGGAATGAAGTCATTATGTTACTGGTCTTGGGTTACTAAATGAATGGCATTAATAACCAAAGGCACATTGTATTCGACCTAAGGGCACGATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1514815 lncRNA downstream 7916 75360967 ~ 75361930 (-) True G1326396
TU1514813 lncRNA downstream 10383 75357929 ~ 75359463 (-) True G1326394
TU1514810 lncRNA downstream 18543 75350942 ~ 75351303 (-) True G1326391
TU1514806 lncRNA downstream 22542 75347024 ~ 75347304 (-) True G1326387
TU1514788 lncRNA downstream 65989 75303487 ~ 75303857 (-) True G1326372
TU1514838 lncRNA upstream 18307 75390359 ~ 75391095 (-) True G1326411
TU1514869 lncRNA upstream 36107 75408159 ~ 75408529 (-) True G1326432
TU1515425 lncRNA upstream 85955 75458007 ~ 75498229 (-) True G1326843
TU1515449 lncRNA upstream 127547 75499599 ~ 75499867 (-) True G1326851
TU1515464 lncRNA upstream 145285 75517337 ~ 75517880 (-) True G1326859
XR_005036325.1 mRNA downstream 177912 75190621 ~ 75191934 (-) True LOC118938932
XM_036945389.1 mRNA downstream 381515 74883029 ~ 74988331 (-) True LOC110490689
XM_036945390.1 mRNA downstream 454561 74883029 ~ 74915285 (-) False LOC110490689
XM_036945387.1 mRNA downstream 493527 74806009 ~ 74876319 (-) True LOC110514333
XM_036945386.1 mRNA downstream 493830 74806009 ~ 74876016 (-) False LOC110514333
XM_036945405.1 mRNA upstream 148249 75520301 ~ 75547039 (-) False LOC110518764
XM_036945404.1 mRNA upstream 165012 75537064 ~ 75546164 (-) False LOC110518764
XM_036945400.1 mRNA upstream 165012 75537064 ~ 75547039 (-) False LOC110518764
XM_036945401.1 mRNA upstream 165012 75537064 ~ 75547039 (-) False LOC110518764
XM_036945402.1 mRNA upstream 165012 75537064 ~ 75547039 (-) False LOC110518764
TU1514494 other downstream 316489 75052749 ~ 75053357 (-) True G1326164
TU1514413 other downstream 595893 74772299 ~ 74773953 (-) True G1326095
TU1514360 other downstream 646446 74722589 ~ 74723400 (-) True G1326070
TU1514307 other downstream 762530 74605371 ~ 74607316 (-) True LOC118938855
TU1514158 other downstream 974278 74375301 ~ 74395568 (-) True G1325915
TU1515635 other upstream 626454 75998506 ~ 75999000 (-) True G1326996
TU1516813 other upstream 2046269 77418321 ~ 77429149 (-) False LOC110515635
TU1516806 other upstream 2076216 77448268 ~ 77499704 (-) False LOC110515635
TU1516814 other upstream 2129968 77502020 ~ 77506774 (-) True LOC110515635
TU1517067 other upstream 2499227 77871279 ~ 77874604 (-) True G1328123

Expression Profile