RNA id: TU1516787


Basic Information

Item Value
RNA id TU1516787
length 475
lncRNA type read_through
GC content 0.40
exon number 3
gene id G1327884
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77591717 ~ 77597950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accgactgagctagccgggCTTGGAGATACAACCCACAACATCCTAAAATAACACAACTGTTATaccaggttggtaaataacacaccaacatgtaataactatcagaccaggttggtaaataacacaccaacatgcaataactgtcagaccaggttggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacacaccagcccaacatgtaataactgtcagaccaggttggtaaataacccaccaacatgtaataactgtCAGACCAGATTGGTAAATAACCcaccaacatgtaataactgtcagaccagattggtaaataacacaccaacatgtaataactgtcagaccaggttggtaaataacagcccaacatgtaataactgtcagaccaggttggtaaataacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1516772 lncRNA upstream 7650 77582033 ~ 77584067 (+) False G1327880
TU1516774 lncRNA upstream 7650 77582033 ~ 77584067 (+) False G1327880
TU1516775 lncRNA upstream 7650 77582033 ~ 77584067 (+) False G1327880
TU1516776 lncRNA upstream 7650 77582033 ~ 77584067 (+) False G1327880
TU1516777 lncRNA upstream 7650 77582033 ~ 77584067 (+) False G1327880
TU1516795 lncRNA downstream 13215 77611165 ~ 77611499 (+) True G1327891
TU1516882 lncRNA downstream 25721 77623671 ~ 77623920 (+) True G1327960
TU1516883 lncRNA downstream 26883 77624833 ~ 77625058 (+) True G1327961
TU1516888 lncRNA downstream 29384 77627334 ~ 77627740 (+) True G1327966
TU1516916 lncRNA downstream 52401 77650351 ~ 77650575 (+) True G1327994
XR_005036244.1 mRNA upstream 173511 77416587 ~ 77418206 (+) False LOC118938862
XM_036945415.1 mRNA upstream 1120900 76041011 ~ 76470817 (+) False LOC118938861
XM_036945563.1 mRNA downstream 212891 77810841 ~ 77812644 (+) True LOC118938903
XM_036945433.1 mRNA downstream 361021 77958971 ~ 78066964 (+) False LOC110490691
XR_005036248.1 mRNA downstream 361021 77958971 ~ 78066964 (+) False LOC110490691
XR_005036249.1 mRNA downstream 361021 77958971 ~ 78066964 (+) False LOC110490691
XM_036945434.1 mRNA downstream 497581 78095531 ~ 78107017 (+) True rergla
TU1516094 other upstream 778429 76809860 ~ 76813288 (+) True G1327379
TU1515923 other upstream 1001832 76587574 ~ 76589885 (+) False G1327230
TU1515107 other upstream 1706570 75884811 ~ 75885147 (+) True G1326605
TU1515080 other upstream 1785198 75805999 ~ 75806519 (+) True G1326586
TU1514961 other upstream 1993202 75593591 ~ 75598515 (+) True G1326503
TU1517133 other downstream 361116 77959066 ~ 78017811 (+) False LOC110490691
TU1517137 other downstream 361116 77959066 ~ 77981673 (+) True LOC110490691
TU1517192 other downstream 472079 78070029 ~ 78070403 (+) True G1328201
TU1518030 other downstream 1151428 78749378 ~ 78763940 (+) False LOC118936267
TU1518031 other downstream 1151428 78749378 ~ 78763940 (+) False LOC118936267

Expression Profile