RNA id: TU1518139


Basic Information

Item Value
RNA id TU1518139
length 855
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1328815
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 78763099 ~ 78766048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGAACAGATCAGGTTTTTAATGGGTTTCCTGTAGTTACACCAAGTCCCTAGTAACAACATGGTATAACACAGTATTTGCATGGCAATAAACCAGTCACAAACTGGAGAGTCACATTTCAGCAGATTTCTTTTCAGGATTTTATTCATGACAGCTGGTGTTACTCAGAACAGATGTAAAACACCAGCATTGTCTCAGTCAATAGGAACATACCAGCATCACAGTTCTATGTACTGATGCCCTCCAGATCTCCTTCACCCGTTCACTGTACAGAGACTATGAGAACAGAAAGCTGATAACAACGTGGACACAAGGGAAACCTCTCGTCAAGCAATGAACAGAAAGGCTTTATGTACCAAACACACAGCGGTCAAAGACTGGTCACTTGTCAGACAGGATCTCCTGTGATGGGGTCATGAAAGGATCCTCTCAACACACATCATTAGCTGTTCCAAGGATCCATTCATTATGAACATCCTGAGTGGGGGTCACATGTTACCGTTGTGAACACAGTTAGGGAGGCCATTCCTCTGGTGTCCCAAAGCAAACGAGGACTGTTGTGATTCCCCCCATAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGATGGGTTTATCCACAGGTCCTATATGACAGGGCAAGGCTGGGTTTATCCACAGGTCCTATATGACAGGGAAAGGAAGAGCTCATTTCTTCTTGGTGGCTCTCTTTCCCTCACCCTTCTTGGGTTTCCCCTTGCCTCTCAGTTTCCTCAGCCGACGCATCTCCTCCTTGAAGTCCTCGTGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1517985 lncRNA downstream 23967 78734346 ~ 78739132 (-) True G1328738
TU1517998 lncRNA downstream 30387 78732275 ~ 78732712 (-) True G1328751
TU1517990 lncRNA downstream 47091 78712833 ~ 78716008 (-) True G1328743
TU1517969 lncRNA downstream 55008 78669486 ~ 78708091 (-) True G1328723
TU1518155 lncRNA upstream 23024 78787014 ~ 78841501 (-) False G1328822
TU1518156 lncRNA upstream 23024 78787014 ~ 78787803 (-) False G1328822
TU1518158 lncRNA upstream 23024 78787014 ~ 78787803 (-) True G1328822
TU1518169 lncRNA upstream 48842 78812832 ~ 78813254 (-) True G1328833
TU1518107 lncRNA upstream 61317 78825307 ~ 78826026 (-) False G1328808
XM_036945457.1 mRNA downstream 67318 78677394 ~ 78695781 (-) False LOC118936340
XM_036945566.1 mRNA upstream 114750 78878740 ~ 78918133 (-) True LOC118938905
XM_036945473.1 mRNA upstream 543190 79307180 ~ 79339577 (-) False LOC118938873
XM_036945474.1 mRNA upstream 543190 79307180 ~ 79340005 (-) False LOC118938873
XM_021622541.2 mRNA upstream 723013 79487003 ~ 79489128 (-) True LOC110536863
XR_005036252.1 mRNA upstream 845556 79609546 ~ 79612871 (-) False LOC118938874
TU1517636 other downstream 460519 78301668 ~ 78302580 (-) False LOC118938867
TU1517575 other downstream 462244 78298576 ~ 78300855 (-) False LOC118938867
TU1517067 other downstream 888495 77871279 ~ 77874604 (-) True G1328123
TU1516814 other downstream 1256325 77502020 ~ 77506774 (-) True LOC110515635
TU1516806 other downstream 1263395 77448268 ~ 77499704 (-) False LOC110515635
TU1518205 other upstream 106335 78870325 ~ 78871031 (-) True G1328861
TU1518240 other upstream 161924 78925914 ~ 78926137 (-) True G1328892
TU1518366 other upstream 265677 79029667 ~ 79030956 (-) True G1328987
TU1518390 other upstream 311300 79075290 ~ 79075536 (-) True G1329004
TU1519010 other upstream 778804 79542794 ~ 79543153 (-) True G1329475

Expression Profile