RNA id: TU1519197



Basic Information


Item Value
RNA id TU1519197
length 212
lncRNA type intronic
GC content 0.53
exon number 1
gene id G1329601
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 79985228 ~ 79985439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTGAAACATTCTCCTTCTTGTTCGACATGCTGATTAGAGTGGATTTTGACACAAAGAGAGAATTTAGTTTCCACGGAgatctaccccctccctctctcctcctctctcctattcccTAACCCTTATAGAACGTACCTCACCCcaactctcccctccccctcctctcctcctcctcccctcctctcctcacctccccctcctctcccctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1519193 lncRNA downstream 6826 79977949 ~ 79978402 (-) True G1329599
TU1519192 lncRNA downstream 7560 79977419 ~ 79977668 (-) True G1329598
TU1519188 lncRNA downstream 10422 79974511 ~ 79974806 (-) True G1329595
TU1519186 lncRNA downstream 12407 79972512 ~ 79972821 (-) True G1329593
TU1519185 lncRNA downstream 12766 79972246 ~ 79972462 (-) True G1329592
TU1519198 lncRNA upstream 745 79986184 ~ 79986511 (-) True G1329602
TU1519199 lncRNA upstream 1408 79986847 ~ 79987064 (-) True G1329603
TU1519201 lncRNA upstream 2957 79988396 ~ 79988640 (-) True G1329605
TU1519202 lncRNA upstream 3332 79988771 ~ 79989072 (-) True G1329606
TU1519203 lncRNA upstream 3765 79989204 ~ 79989586 (-) True G1329607
XM_036945486.1 mRNA downstream 6599 79910682 ~ 79978629 (-) False LOC110510401
XM_036945477.1 mRNA downstream 289759 79691618 ~ 79695469 (-) True LOC118938877
XR_005036254.1 mRNA downstream 293923 79672043 ~ 79691305 (-) False LOC118938876
XM_036945476.1 mRNA downstream 361802 79618502 ~ 79623426 (-) True LOC110513674
XR_005036252.1 mRNA downstream 372357 79609546 ~ 79612871 (-) False LOC118938874
XR_005036264.1 mRNA upstream 149515 80134954 ~ 80139431 (-) False LOC110510850
XR_005036263.1 mRNA upstream 149517 80134956 ~ 80139431 (-) False LOC110510850
XR_005036259.1 mRNA upstream 149549 80134988 ~ 80139431 (-) False LOC110510850
XR_005036267.1 mRNA upstream 149661 80135100 ~ 80139431 (-) False LOC110510850
XR_005036261.1 mRNA upstream 149666 80135105 ~ 80139431 (-) False LOC110510850
TU1519140 other downstream 28119 79940186 ~ 79957109 (-) False LOC110510401
TU1519138 other downstream 71176 79911042 ~ 79914052 (-) False LOC110510401
TU1519163 other downstream 104868 79879408 ~ 79880360 (-) False G1329577
TU1519437 other upstream 147649 80133088 ~ 80139402 (-) False LOC110510850
TU1519407 other upstream 180133 80165572 ~ 80168114 (-) False LOC110510397
TU1519395 other upstream 223621 80209060 ~ 80231319 (-) False LOC110510397
TU1519392 other upstream 272108 80257547 ~ 80266270 (-) False LOC110517959
TU1519397 other upstream 280949 80266388 ~ 80268623 (-) False LOC110517959

Expression Profile