RNA id: TU1519525


Basic Information

Item Value
RNA id TU1519525
length 538
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G1329816
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80394647 ~ 80395346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCAATAATCAATTAAGGCTCTACAGTAGGTTAGACACATTAAGACTCTACAGTAGATAGGGCACATTAAGACTCTACAGTAGGTTAGACACATTAAGGCTCTACAGTAGATAGGGCACATTAAGACTCTACAGTAGGTTAGACACATTAAGGCTCTACAGTAGATAGGGCACATTAAGACTCTACAGTAGGTTAGACACATTAAGGCTCTACAGTAGGTTGGACACATTAAGACTCTACAGTAGGTTAGACACATTAAGGCTCTACAGTAGGTTAGACACATTAAGACTCTACAGTAGATAGGGCACATTAAGACTCTACAGTAGGTTAGACACATTAAGACTCTACAGTAGATAGGGCACATTAAGACTCTACAGTAGGTTGGACACATTAAGGCTCTACAGTAGGTTAGACACATTAAGACTCTACAGTAGGTTAGACACATTAAGGCTCTACAGTAGGTTGGACACATTAAGGCTCTACAGTAGGTTAGACACATTAAGGCTCTAACCCTGATAACCTGATACGCTGATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519521 lncRNA downstream 13600 80380687 ~ 80381047 (-) True G1329813
TU1519518 lncRNA downstream 23130 80371087 ~ 80371517 (-) True G1329810
TU1519515 lncRNA downstream 24116 80369945 ~ 80370531 (-) False LOC110516866
TU1519508 lncRNA downstream 24158 80369945 ~ 80370489 (-) False LOC110516866
TU1519533 lncRNA upstream 14943 80410289 ~ 80411183 (-) False G1329824
TU1519534 lncRNA upstream 14943 80410289 ~ 80410790 (-) True G1329824
TU1519536 lncRNA upstream 22148 80417494 ~ 80417790 (-) True G1329826
TU1519538 lncRNA upstream 29056 80424402 ~ 80424639 (-) True G1329828
TU1519573 lncRNA upstream 70771 80466117 ~ 80469202 (-) False G1329854
XM_036945567.1 mRNA downstream 2906 80370567 ~ 80391741 (-) False LOC118936542
XR_002472471.2 mRNA downstream 24156 80369309 ~ 80370491 (-) False LOC110516866
XR_005036283.1 mRNA downstream 46760 80286961 ~ 80347887 (-) False LOC110516867
XM_036945521.1 mRNA upstream 721850 81117196 ~ 81119754 (-) False LOC110515349
XR_005036293.1 mRNA upstream 721850 81117196 ~ 81119754 (-) False LOC110515349
XR_005036294.1 mRNA upstream 802976 81198322 ~ 81198931 (-) False LOC118938883
XR_005036295.1 mRNA upstream 802976 81198322 ~ 81198977 (-) False LOC118938883
XR_005036296.1 mRNA upstream 946568 81341914 ~ 81343353 (-) True LOC118938884
TU1519502 other downstream 2973 80370749 ~ 80391674 (-) False LOC118936542
TU1519501 other downstream 3038 80370569 ~ 80391609 (-) False LOC118936542
TU1519503 other downstream 3038 80370749 ~ 80391609 (-) True LOC118936542
TU1519403 other downstream 40334 80348261 ~ 80354313 (-) False G1329752
TU1519490 other downstream 41006 80352703 ~ 80353641 (-) True G1329798
TU1519627 other upstream 156888 80552234 ~ 80552485 (-) True G1329894
TU1519955 other upstream 483474 80878820 ~ 80879403 (-) False G1330106
TU1519954 other upstream 483654 80879000 ~ 80879403 (-) True G1330106
TU1519998 other upstream 560185 80955531 ~ 80957790 (-) False G1330142
TU1519999 other upstream 560185 80955531 ~ 80957790 (-) True G1330142

Expression Profile