RNA id: TU1519999


Basic Information

Item Value
RNA id TU1519999
length 1930
RNA type TUCP
GC content 0.47
exon number 3
gene id G1330142
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80955531 ~ 80957790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGACATCATATCCTCCCTCTACAACCACCATGTGTACATCAGGAACCTCTGACATCATATCCTCCCTCTACAACCACCATGTGTACATCAGGAACCTCTGACATCATAtccaccctctacaaccaccatGTGTACATCAGGAACCTCTGACATCATATCCTCCCTCTACAACCACCATGTGTACATCAGGAATCTCTGACATCATATCCTCCCTCTCTACAACCACCATGTGTACCTCAGGAACCTCTGACATCATATCCTCCCTCTCTACAACCACCATGTGTACATCAGGAACCTCTGACATCATATCCTCCCTCTCTACAACCACCATGTGTACATCAGGAACCTCTGACATCATATCCTCCCTCTCTACAACCACCATGTGTACATCAGGAACCTCTGACGacatatcctccctctctctccgttatATCCAGATGTATGAACTGCAGCACCAACCTTACTCACTACGTCGCTCGTTCAAACATCCagaccacacaaacacattcctCCTCCTATCCATCTGAGCTGtgtgtatcatgttgtctgtacCAGGACGTACGATCAGAACTGTAAAGTGCACTTAGAGAATGACCACATTTCCAACAATGCTGGTTGTATCTAAAAAcagacaggggacagacaggagactctcagCTAGAGACAGACCGGGGcaggggacagacaggagactgtctcagctagagacagacaggaacagggGCTCAGCAAGGATTGGACTTAGTGTGTCTGGGTCTGGACAGAAGACGGCCATTTTGATCAAGATACATAGCTGTAACAGTAGTAGCAGAGAAGATCGAGAGAACCAGGACCCAGTAATGTCCTTCCAGTCTATATTGAAAGTTGGCCTGCCCATTGGACAACAGAAAGACAAAGATGGACGTTTTGAGGTATGTGTGAATGTTCTGAAGACGGACGTTTTGAGGTATGTGTGAATGTTCTGAGAGGATGACAGCTTTATCTCGTCCTCAGTTTCAGTCTGAAATGTCCCACAGCCCTGATTGGATAAACAGGGAGAGAAAAAACCAACCCAGTTTAAACAAGGATCCCTTTTCCCCCAACAGTCTTTCAGTTTGAGAcggcacagagacagacaggacagagacagacaggacagagacagacaggacagagacggGACGGGACAGGACAGAGACGGGACAGGACATTACGAAAGGATTGTTGATATTGTCTAAGATTGTCGCCATGCGTTTGGACTGTCCGACACATCGTAGAAAAATAAAATGAGGCATATATTGAAAGACGGAATGACAAAGTACTGCAAGAATTCAATGAATAGATAGATATACAATGTTTTTCTTTATAGCTTATAAATACGGTAATATACACTATGTGGTACAAAAATATTAAAACACTTtgcaaaaaaaacaactaaatgaTTCGAAGAACTGATCAGGTACAATAACTAGTCCTCTGTGGAGAAGTTTCCCtcggggggagatggaggagaagtttccctcggggggagagatggagaagtttccctcgggggggAGATGGAGAAGTTTCCCTcgggggggagatggaggagaagtttCCCTCGGGGGGGAAGATGGAGAAGTTTCCCTCGGgggggaagatggaggagaagtttCCCTCGGgggggaagatggaggagaagtttCCCTCGGGGGAGATGGAGGCAGAGAAAATACAGGTGAAACAGAGGTAGACCTCAGAAGGTAGGCTACAGCGTAAGATAGATGACCCCCCCCTCAGTGACAGATGTGTTCTGGGTCTCTTATCCAGACAGGATAGATAACCCCCCCTCAGTACCAGATGTGTTCTGGGTCTCTTATCCAGACAGGATACATGacacaccccccccctccctcagtaCCAGATGTGTTCTGGGTCTCTTATCCAGACAGGAtagatgaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1519997 lncRNA downstream 238 80954799 ~ 80955293 (-) True G1330141
TU1519996 lncRNA downstream 1970 80952293 ~ 80953561 (-) True G1330140
TU1519977 lncRNA downstream 45674 80909546 ~ 80909857 (-) True G1330123
TU1519976 lncRNA downstream 46469 80908804 ~ 80909062 (-) True G1330122
TU1519950 lncRNA downstream 81513 80873591 ~ 80874018 (-) True G1330103
TU1520001 lncRNA upstream 60 80957850 ~ 80959318 (-) True G1330143
TU1520005 lncRNA upstream 7163 80964953 ~ 80970599 (-) True G1330147
TU1520016 lncRNA upstream 22662 80980452 ~ 80982314 (-) False G1330155
TU1520015 lncRNA upstream 24005 80981795 ~ 80982314 (-) True G1330155
TU1520018 lncRNA upstream 30478 80988268 ~ 80989878 (-) True G1330157
XM_036945567.1 mRNA downstream 563790 80370567 ~ 80391741 (-) False LOC118936542
XR_002472471.2 mRNA downstream 585040 80369309 ~ 80370491 (-) False LOC110516866
XR_005036285.1 mRNA downstream 607644 80286961 ~ 80347887 (-) False LOC110516867
XM_036945521.1 mRNA upstream 159406 81117196 ~ 81119754 (-) False LOC110515349
XR_005036293.1 mRNA upstream 159406 81117196 ~ 81119754 (-) False LOC110515349
XR_005036294.1 mRNA upstream 240532 81198322 ~ 81198931 (-) False LOC118938883
XR_005036295.1 mRNA upstream 240532 81198322 ~ 81198977 (-) False LOC118938883
XR_005036296.1 mRNA upstream 384124 81341914 ~ 81343353 (-) True LOC118938884
TU1519955 other downstream 76128 80878820 ~ 80879403 (-) False G1330106
TU1519954 other downstream 76128 80879000 ~ 80879403 (-) True G1330106
TU1519627 other downstream 403046 80552234 ~ 80552485 (-) True G1329894
TU1519502 other downstream 563857 80370749 ~ 80391674 (-) False LOC118936542
TU1520033 other upstream 47082 81004872 ~ 81006072 (-) True G1330168
TU1520239 other upstream 159410 81117200 ~ 81119722 (-) False LOC110515349
TU1520240 other upstream 159410 81117200 ~ 81119722 (-) True LOC110515349
TU1520293 other upstream 239034 81196824 ~ 81199165 (-) False LOC118938883
TU1520291 other upstream 239970 81197760 ~ 81199165 (-) False LOC118938883

Expression Profile