RNA id: TU1520016


Basic Information

Item Value
RNA id TU1520016
length 443
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1330155
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 80980452 ~ 80982314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTCCTCCACAGCGAACAGCTTGACGATGTTCTTATGGTTGAGTTTCTTCAGGACCTCAAACTCTCTCATTTGGACGTCGAGTGGTCGCAGGAAACTGAGGTTGTTGAACACCTTCACCGCATATAGGTCCCCCGTTTTCTGGTGTTACAGaacacagtgttatatacaggtgtgttttcaggtgttacagaacacagtgttatatacaggtgtgttttcaggtgttacagaacacatagtgttatatacaggtgtgttttcaggtgttacagaacacacagtgttatatacaggtgtgttttctggtgttagaacatagtgttatatacaggtgtgttttcaggtgttacagaacacagtgttatatacaggtgtgttttctggtgttacagaacacatagcgttatatacaggtgtgttttcatgtgttacagaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1520005 lncRNA downstream 9853 80964953 ~ 80970599 (-) True G1330147
TU1520001 lncRNA downstream 21134 80957850 ~ 80959318 (-) True G1330143
TU1519997 lncRNA downstream 25159 80954799 ~ 80955293 (-) True G1330141
TU1519996 lncRNA downstream 26891 80952293 ~ 80953561 (-) True G1330140
TU1519977 lncRNA downstream 70595 80909546 ~ 80909857 (-) True G1330123
TU1520018 lncRNA upstream 5954 80988268 ~ 80989878 (-) True G1330157
TU1520028 lncRNA upstream 20595 81002909 ~ 81003303 (-) False G1330166
TU1520030 lncRNA upstream 20595 81002909 ~ 81003406 (-) True G1330166
TU1520032 lncRNA upstream 22020 81004334 ~ 81004779 (-) True G1330167
TU1520049 lncRNA upstream 43925 81026239 ~ 81026823 (-) True G1330175
XM_036945567.1 mRNA downstream 588711 80370567 ~ 80391741 (-) False LOC118936542
XR_002472471.2 mRNA downstream 609961 80369309 ~ 80370491 (-) False LOC110516866
XR_005036285.1 mRNA downstream 632565 80286961 ~ 80347887 (-) False LOC110516867
XM_036945521.1 mRNA upstream 134882 81117196 ~ 81119754 (-) False LOC110515349
XR_005036293.1 mRNA upstream 134882 81117196 ~ 81119754 (-) False LOC110515349
XR_005036294.1 mRNA upstream 216008 81198322 ~ 81198931 (-) False LOC118938883
XR_005036295.1 mRNA upstream 216008 81198322 ~ 81198977 (-) False LOC118938883
XR_005036296.1 mRNA upstream 359600 81341914 ~ 81343353 (-) True LOC118938884
TU1519998 other downstream 22662 80955531 ~ 80957790 (-) False G1330142
TU1519999 other downstream 22662 80955531 ~ 80957790 (-) True G1330142
TU1519955 other downstream 101049 80878820 ~ 80879403 (-) False G1330106
TU1519954 other downstream 101049 80879000 ~ 80879403 (-) True G1330106
TU1519627 other downstream 427967 80552234 ~ 80552485 (-) True G1329894
TU1520033 other upstream 22558 81004872 ~ 81006072 (-) True G1330168
TU1520239 other upstream 134886 81117200 ~ 81119722 (-) False LOC110515349
TU1520240 other upstream 134886 81117200 ~ 81119722 (-) True LOC110515349
TU1520293 other upstream 214510 81196824 ~ 81199165 (-) False LOC118938883
TU1520291 other upstream 215446 81197760 ~ 81199165 (-) False LOC118938883

Expression Profile