RNA id: XM_036945923.1


Basic Information

Item Value
RNA id XM_036945923.1
length 1652
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC118939494
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 1556467 ~ 1558333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGACTGGTGATTGGTGACTGGTGACTGGTGATTTTGGGGCTGGATCCAAATagtaccctatttcctatatatttTTACCAGAGTTGTATGGGGCCTAGTAgtgtacaatatagggaatagggtgccatttggcttcTTTGCCTTGCTTAAGGGCTGATGGactgatttttcacctagtcggctcggggattcgaaccagcggcCCTTGGGTTTCACCGTGTGTATTAGCCTCTTCTCTCCACCAGCCAACAGAGTAAACCCCATGCCGAGAGTCTCTCAGATGATGGGGGTAGTCCGTATTGTCAGGCTACCACAACCCCACCAGCACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACACCATCGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACGCTGCCTGACTTCCAGGACCCCATTGGGGTCACACTGCCTGACTTCCAGGACGCCATTGGGGTCACGCTGCCTGACTTCCAGGACGCCATTGGGGTCACACTGCCTGACTTCCAGGACACCATTGGGGTCACACTGCcagacacctacaacaccagttGCCGCAGGAagggccaagaagatcatcaaggacctcagccacctgagctAACGCCGCTTCCATCACTCTGACGCCAGCAGTACAGGAACATCATGGCTAAAACTAACAGACTGgtcaatagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccaccaGGTTGCTGAATAGACACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGACACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccatcaggttGCTGAATAGATACtactagcttctacccccagaccaccaGGTTGCTGAATAGATACtactagcttctacccccagaccatcaggtcggccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1521918 lncRNA upstream 358 1553903 ~ 1556109 (+) True b3galnt2
TU1521908 lncRNA upstream 29756 1526486 ~ 1526711 (+) True G1331690
TU1521906 lncRNA upstream 42931 1513170 ~ 1513536 (+) True G1331688
TU1521893 lncRNA upstream 52659 1503578 ~ 1503808 (+) True G1331677
TU1521892 lncRNA upstream 52918 1503341 ~ 1503549 (+) True G1331676
TU1521959 lncRNA downstream 15038 1573371 ~ 1573968 (+) True G1331714
TU1521980 lncRNA downstream 41622 1599955 ~ 1600307 (+) True G1331734
TU1521987 lncRNA downstream 48616 1606949 ~ 1609052 (+) True G1331741
TU1522014 lncRNA downstream 87504 1645837 ~ 1732281 (+) True G1331757
TU1522016 lncRNA downstream 94128 1652461 ~ 1653351 (+) True G1331759
XM_036945922.1 mRNA upstream 361 1529098 ~ 1556106 (+) False b3galnt2
XR_005036410.1 mRNA upstream 361 1529098 ~ 1556106 (+) False b3galnt2
XR_005036409.1 mRNA upstream 31058 1522256 ~ 1525409 (+) True LOC110491206
XM_036945921.1 mRNA upstream 40217 1501444 ~ 1516250 (+) True LOC110491205
XR_005036408.1 mRNA upstream 131149 1424306 ~ 1425318 (+) True LOC118939493
XM_036945928.1 mRNA downstream 53411 1611744 ~ 1825933 (+) False arid4b
XM_036945930.1 mRNA downstream 53411 1611744 ~ 1825933 (+) False arid4b
XM_036945931.1 mRNA downstream 53411 1611744 ~ 1825933 (+) False arid4b
XM_036945933.1 mRNA downstream 53411 1611744 ~ 1825933 (+) False arid4b
XM_036945934.1 mRNA downstream 53411 1611744 ~ 1825933 (+) False arid4b
TU1521866 other upstream 117342 1438787 ~ 1439125 (+) True G1331652
TU1520934 other upstream 1133193 403730 ~ 423274 (+) True LOC110491220
TU1520947 other upstream 1215391 340076 ~ 341076 (+) True G1330834
TU1520792 other upstream 1228243 319873 ~ 328224 (+) True G1330718
TU1520738 other upstream 1365672 187717 ~ 190795 (+) True G1330676
TU1522652 other downstream 370991 1929324 ~ 1930473 (+) True G1332260
TU1522653 other downstream 372421 1930754 ~ 1931132 (+) True G1332261
TU1522971 other downstream 737523 2295856 ~ 2309567 (+) True heatr5b
TU1523176 other downstream 1372887 2931220 ~ 2939940 (+) True LOC110491239
TU1523191 other downstream 1414475 2972808 ~ 2973800 (+) True G1332701

Expression Profile