RNA id: TU1523257


Basic Information

Item Value
RNA id TU1523257
length 822
RNA type TUCP
GC content 0.54
exon number 8
gene id LOC110492796
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3065065 ~ 3201726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtagctagttaacgttacagCTCGTCCTGAAGTCAGATGATTGAATAACAGTCGGTTTCTTGCTTGTTAGCTACGTTACTACTAGACTCAACAAGAATGGCTCCTCACAAGGTTGTTGTCAAGTGTGGGAGCTATGCTGTGTTGGTGGATCTACAGATCATTGGGCCTCTGGGCCACGGAGCACCACAGGAAACCAGCTGGTTCACTATGGAGCACACTGAGGAGGTCACTAGTCTGGTGAGAGATGCTGTGGACCGGAGGGTGAGGCTCTACATAGACTGCCTTCACAAAAGAGGACAGCCCAAACACAAGAGAGAGCTGCCACGTGCTAACCCCCTCTGTGTGAAAGGGCAAAGAGTTAGCCTGGTGGCCAACTTCGTGAAGAGACATTTCAACCTGTGGTGTATTGTCAAGCATCAGTATGGAGAGCTGCGTGTGTTTCCTGAGCgttatgtggtgtgtgtgagccGACTGGAGGATGCCTCAGCTAACCCGACCCCGGCCGTAACCGTGagtcAGAGTACAGAGTCCCAGTATTTTTCCAGGCCAGCAGCAGAAACCAGAGATGAACTGAACTCCTCCGCAATAACAAAGAGGAGTTCCCTCCAGAAGATAGCCAGACACGCGAACGCCAGGCCCCAACCAGAAACCCAACCTCTGCCCTGCGGATCTGTCCTGGGGAAGAAACTGCACTCTGAGCAGAACAGAGTCCCAGGAGAGCAGGTTCCGGAGCCCCAGCCACCGACAGGCCAGGCCAGGCTTACCACAGACGCAGTGCTGCCCCACGGCCATCCCACAACATCCACTGACCCCACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1523248 lncRNA upstream 7779 3056588 ~ 3057539 (+) True G1332739
TU1523209 lncRNA upstream 11292 3043717 ~ 3054026 (+) False LOC110492798
TU1523211 lncRNA upstream 11292 3043717 ~ 3054026 (+) False LOC110492798
TU1523216 lncRNA upstream 11292 3043717 ~ 3054026 (+) False LOC110492798
TU1523220 lncRNA upstream 11292 3044658 ~ 3054026 (+) True LOC110492798
TU1523258 lncRNA downstream 940 3198191 ~ 3199825 (+) True LOC110492796
TU1523328 lncRNA downstream 5959 3203210 ~ 3203435 (+) True G1332808
TU1523332 lncRNA downstream 9236 3206487 ~ 3207034 (+) True G1332812
TU1523338 lncRNA downstream 15863 3213114 ~ 3216278 (+) True G1332817
TU1523379 lncRNA downstream 68088 3265339 ~ 3266639 (+) True G1332851
XM_036945969.1 mRNA upstream 11830 2989203 ~ 3053488 (+) False LOC110492798
XM_036945970.1 mRNA upstream 11830 2989203 ~ 3053488 (+) False LOC110492798
XM_036945965.1 mRNA upstream 95712 2945412 ~ 2969606 (+) True memo1
trnah-gug-6 mRNA upstream 120258 2944989 ~ 2945060 (+) True trnah-gug-6
XM_036945964.1 mRNA upstream 125378 2931169 ~ 2939940 (+) False LOC110491239
XR_005036399.1 mRNA downstream 489292 3686543 ~ 3687093 (+) True LOC118939483
XM_036945979.1 mRNA downstream 497347 3694598 ~ 3730931 (+) True LOC118939498
XM_036945980.1 mRNA downstream 669233 3866484 ~ 3902198 (+) True btbd3b
XM_036945981.1 mRNA downstream 937166 4134417 ~ 4229378 (+) True sptlc3
XM_036945982.1 mRNA downstream 1047747 4244998 ~ 4337416 (+) False tasp1
TU1523191 other upstream 91518 2972808 ~ 2973800 (+) True G1332701
TU1523176 other upstream 125378 2931220 ~ 2939940 (+) True LOC110491239
TU1522971 other upstream 755751 2295856 ~ 2309567 (+) True heatr5b
TU1522653 other upstream 1134186 1930754 ~ 1931132 (+) True G1332261
TU1522652 other upstream 1134845 1929324 ~ 1930473 (+) True G1332260
TU1523349 other downstream 32948 3230199 ~ 3231407 (+) False G1332826
TU1523350 other downstream 32948 3230199 ~ 3231014 (+) True G1332826
TU1524854 other downstream 1142587 4339838 ~ 4340868 (+) True G1333963
TU1525057 other downstream 1537538 4734789 ~ 4937679 (+) True LOC110491218
TU1525602 other downstream 2322689 5519940 ~ 5521230 (+) True G1334530

Expression Profile