RNA id: XM_036945979.1


Basic Information

Item Value
RNA id XM_036945979.1
length 2188
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC118939498
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 3694598 ~ 3730931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagacagggagcTAAACCTCTTGGAGAGTTCAACACTGAAGAAGTCTGCCAATGGTTCAGCAGCATCGGCCTGCACAAATGCCTTACCTACatcagagaGGCAGAGCTGTGTGGAACTGATATAACCTCAATAGACCTGACGACCCTGGAGGTTCTTCACATCTCcagtctggaggagagagagcagctcCTATCAGCTGTTTACAGAGAGCTACACCCGCCCAGCACCACCTCACAGAGACTGGACTCCCTGTTGGAAACTGTTGGTCCTAACAACGTAGAGAAATTCACAGCAGCATTGGTCGCCATGAGCCAATCAAAGTCCTTCCAACGTGTAAGCTGCCTCAACATGAATCAAACAAAATCCTTTAAATTCAGATGCAAAAGCCCTAACCCTGTGAACCAGAGGACCTCTCTGCTGATGGAGATCACCATAAATGCGTCGGTGCAGATAGTCCACCTGCGGACCCCCAGGGAAACCACGGTggggaaggtgatggagtcctgTCTAAGGATGCTAGGAATGACCGAGGACAAGGACCTCTTCAGCCTCACAGACAAACCAGGTTCTTCAGAGGAGCTGTCATCAGACCTGCAGATAGTTGACTTGGCAAGCTCAGAGAACAAATATCTAGAGTTGTATCTGTGCAAAAAGAATAAACCTAAAGGTGTTGTCAAGCCCCAATCCCCAGCTCCTTCTTTCAACGGGTCCCTTGGTGACGGTCCAGTCAATCAAACCCGCCAGGTACAAGGGGTCAGCCAGCCAGGTAAAGAGAAAAAGATACGCGAACTCAATGAACAGGTGGACTCTCTACAGAACGTCATCCTGCAGGTTCAGGAGATCCACCACGGGCTGGTAGCATTCTGTTCAGAGCTGAAGAGAATGGATGGGGAGGTGGATCTGTCAGGGCTGAGATCCCCAGAGCTGAAGCAGCGCCTTGGGCTGGCTCTGGGACTGCTCAGGGACAAGAGACACAGTCTAAAGAGCCTCCGAGAGTCCATGAGAAACACAGCCGTTCGCAGGAATGAGCGATCAGAGGTTCGTCTTCTGGATAAGATGAAGCTGAACTGTCAGGTGTTTAAAGAAGAAATCTCTCTGGTGCACCTCAATCGACAAGTAGCCCATCTACAGAAAGCACTTCAGGACAGCCAAGTCAAGGAGAGATCCCTCCAGTCCCAGTCTCACCAGAGGAAGTGTTCTACCCTGGGCCAACTGGTCACTCCCCAGTGTCCTGCCATGCTACTGGTTGTCCAGGAGAGCCGTGGGAAAGATGGGCGGTATGGATTCACCTTCCAACTCTCACAGGACAGAGGACTGGTGGTGATACAGGTGGACAACTCACATTCACCCCTCTGTCTGGAGGAcagATTGGTGGAGGTGAACGGGGTACCAGTGGTGGACCACAGCGAACAGGAGTTGAGCACCCTACTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGACCTCCTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGACCTAATCCTCCTGGGACCCAGTGCTCAGATAGTAGATCTGGGGAGACCTCCTCCTCCTGGGACCCAGTGCTCAGATAGTGGTTCTGAGGAGAACTCCTACTCCTGGGACCCCAGTGCTCAGATAGTGTTTCAGAGGAGACCTCCTCCTTCCCGCTTCAGACCTAGAAGACCCCCCTCCTGTTAGTCCCACCCCCATCCTCCCAGCCCCAGAAGAGCCCCTCCTATTAGTCTCACCACCAGTCACCATCCCAGTAGAACCACCTCCTAGCTCTCCTCCTCCCAGTCCCAGTCCGAGCAGACCCCCTCCTAGCTCTCCTCCTCCCAGTCCCAGTCCGAGCAGACCCCCTCCTAGCTCTCCtcctcccagtcccagtcccagtagaCCCCATCCTAGCTCTCCTCCTCCCAGTCAAAATCCCAGTAGAATCCCTCCTAGCTCTCATCTCAGTCTCAGTCCCAGTAGACTCCCTCCTAGCTCTCCTCCTCCCAGTACCCATCCCAGTAGAACCCCCTCATAGCTCTCCTCCTCCCAGGGCCAGTCCGAGCAGAACCCCTCCTAGCTCTCTTCCTCCCAGTCCCCAACCCAGTAGACCCCCTCCTAGCTCTCCTCCTCCCAGTCCCCATCCCAGTCGATCCCCTCCTAGCTCTCCTCCTCCCAGTCCCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1524118 lncRNA upstream 113100 3580806 ~ 3581498 (+) True G1333403
TU1524035 lncRNA upstream 203623 3489931 ~ 3490975 (+) True G1333333
TU1524026 lncRNA upstream 232897 3461101 ~ 3461701 (+) True G1333324
TU1524012 lncRNA upstream 264288 3428000 ~ 3430310 (+) True G1333310
TU1524006 lncRNA upstream 271216 3422910 ~ 3423382 (+) True G1333304
TU1524173 lncRNA downstream 3774 3734705 ~ 3735812 (+) True G1333447
TU1524329 lncRNA downstream 16311 3747242 ~ 3747512 (+) True G1333570
TU1524333 lncRNA downstream 19706 3750637 ~ 3751000 (+) True G1333574
TU1524343 lncRNA downstream 29980 3760911 ~ 3761147 (+) True G1333584
TU1524345 lncRNA downstream 31201 3762132 ~ 3762372 (+) True G1333586
XR_005036399.1 mRNA upstream 7505 3686543 ~ 3687093 (+) True LOC118939483
XM_036945973.1 mRNA upstream 492872 3065065 ~ 3201726 (+) False LOC110492796
XM_036945980.1 mRNA downstream 135553 3866484 ~ 3902198 (+) True btbd3b
XM_036945981.1 mRNA downstream 403486 4134417 ~ 4229378 (+) True sptlc3
XM_036945982.1 mRNA downstream 514067 4244998 ~ 4337416 (+) False tasp1
XM_036945984.1 mRNA downstream 514067 4244998 ~ 4337416 (+) False tasp1
XM_036945983.1 mRNA downstream 514406 4245337 ~ 4337416 (+) False tasp1
TU1523349 other upstream 463191 3230199 ~ 3231407 (+) False G1332826
TU1523350 other upstream 463584 3230199 ~ 3231014 (+) True G1332826
TU1523257 other upstream 497347 3065318 ~ 3197251 (+) False LOC110492796
TU1523191 other upstream 720798 2972808 ~ 2973800 (+) True G1332701
TU1523176 other upstream 754658 2931220 ~ 2939940 (+) True LOC110491239
TU1524854 other downstream 608907 4339838 ~ 4340868 (+) True G1333963
TU1525057 other downstream 1003858 4734789 ~ 4937679 (+) True LOC110491218
TU1525602 other downstream 1789009 5519940 ~ 5521230 (+) True G1334530
TU1525676 other downstream 1972904 5703835 ~ 5704946 (+) True G1334592
TU1527127 other downstream 2860045 6590976 ~ 6591915 (+) True G1335704

Expression Profile