RNA id: XM_036945848.1


Basic Information

Item Value
RNA id XM_036945848.1
length 1083
RNA type mRNA
GC content 0.49
exon number 3
gene id ly6pge
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 5658729 ~ 5672106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATGGGATTAAGATCAGAGGGGTTTAGCAGCAAACAACCTGCTATTCATTGTGTGATCCCATCTCTCCAGGGAACGACCAGCAAGCGAAAAAACTACGTATTTTCATTGTGCAATCTCATCGTTCCAGGGAAGGACCACGAAGCAAACAACCTGGTTTTCATTGTGTGATCACATCGCTCAAGGGAAGGAGACCACAAAGGAAGGATCAGCATCATCACCAACAACATGAGAGCTTCCCAGAGCGCTATTCTGCTCCTCGTCTCCCTACTCTTTCTCATTAACGACAGTGAAGCCCTACAATGCTATACCTGCATGGGTTCTAGTGATGAAGACTGCAATCGTCAGGGCTCAAAAACCTGTCCAAGCTACTCTGACGCTTGCGCTGTAGTACGAGGACACGGAAGTGAGTTAAACAgcggAGTGATGAAGTCCTGCTCCTACAAGTCTTTCTGTAGCCAGGCCAACAGTCAGGGTTACCGGTCACCAGGGGTCAGAGTTCACTGCTGTTTCTCTGATGACTGCAACGTGACAGGAAACGTATCCAAGCTGGAAGGAAGTCTCAGCTACCTGTTGCTCCTCCTTCCCCTGCTCCTCCACTGGATCTCAAACTAAACATATAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCACTACCCCACCAACCTCCCTTCTCTACCCTACTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACCACCCCACCTACCTCCCTTCCCTACCCTCTTCTCAAACTAAACCCAGCACAAACCAACAGCCATGCCAACTACCCCACCTACCTCCCttccctaccctactctacccgaCTCAAACCCCACCTCTCCAAGCCTCAGCTACCATCCCCACTCTGGCCGACTACGCCATCTAACTCTGCCTATCTAAAGTATCTAAAGTAACACACAATAAAATAACCATTGATATCACCATATAACCAACCCAGAACAAACCAACCGATAACAACCCAGAACAAACCCAAACCAGAACAACCCCAAACCAGAACAACCCTAACTCAGAACAAACCCAgaacaaccccaaccccaactcaGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1525527 lncRNA upstream 5872 5649026 ~ 5652858 (+) True tacc2
TU1525641 lncRNA upstream 25345 5632617 ~ 5633385 (+) True G1334561
TU1525640 lncRNA upstream 25757 5632617 ~ 5632973 (+) False G1334561
TU1525548 lncRNA upstream 60988 5596602 ~ 5597742 (+) True G1334482
TU1525627 lncRNA upstream 64897 5591995 ~ 5593833 (+) True G1334551
TU1525663 lncRNA downstream 4726 5676832 ~ 5677763 (+) True G1334580
TU1525665 lncRNA downstream 5968 5678074 ~ 5678361 (+) True G1334581
TU1525675 lncRNA downstream 27840 5699946 ~ 5700355 (+) True G1334591
TU1525681 lncRNA downstream 60951 5733057 ~ 5733332 (+) True G1334597
TU1525685 lncRNA downstream 73112 5745218 ~ 5745497 (+) True G1334601
XM_036946024.1 mRNA upstream 5859 5598868 ~ 5652871 (+) False tacc2
XM_036945864.1 mRNA downstream 451521 6123627 ~ 6216822 (+) False LOC118939486
XM_036946039.1 mRNA downstream 580577 6252683 ~ 6289144 (+) False slc29a3
XM_036946041.1 mRNA downstream 580577 6252683 ~ 6289144 (+) True slc29a3
XM_036945865.1 mRNA downstream 661234 6333340 ~ 6357849 (+) True LOC110491277
XM_021564617.2 mRNA downstream 688482 6360588 ~ 6382556 (+) False LOC110491273
TU1525602 other upstream 137500 5519940 ~ 5521230 (+) True G1334530
TU1525057 other upstream 721051 4734789 ~ 4937679 (+) True LOC110491218
TU1524854 other upstream 1317862 4339838 ~ 4340868 (+) True G1333963
TU1523349 other upstream 2427323 3230199 ~ 3231407 (+) False G1332826
TU1525676 other downstream 31729 5703835 ~ 5704946 (+) True G1334592
TU1527127 other downstream 918870 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 1092206 6764312 ~ 6768586 (+) False G1335763
TU1527336 other downstream 1362768 7034874 ~ 7057970 (+) True kif20ba
TU1527405 other downstream 1386795 7058901 ~ 7059543 (+) True G1335921

Expression Profile