RNA id: XM_021564618.2


Basic Information

Item Value
RNA id XM_021564618.2
length 4622
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110491273
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 6334443 ~ 6382556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCGCATGTGCGTCTTCGGCGATTTTCTTCCACACGAGCCTGGTGAAAATGGCGGAGCAAAGTTCCGTGCCGAGTGATCTTTACAAACATGTCTATTCATTTCTACTGGAGAACAAGTTTACCAAGGCTGCCCAACACTTCATCAAACAAGCTAAAGTGCCACCCCAGGATGAAAAAGAAGCTGCTGGTCTtcttgacattttcaacttctggGTGAAGTCTCCCGAAGCTAAGAAACGCAAGGCGCTGCCCATCGGTCCGGCAGCCAGTGACAGTCCGTCTGCTAAGAAGGCAAAGACTGCAGAGAGCTCCAGTGAGGAGTCGAGCAGCGACGAGGAGGAAGCTGCAGCACCTGCCAAGGCCACACCCACAGCCAAGGCTCCACGCCCTGCTAAATCAGATTCCAGCAGCAGTGATGATTCCagtgacgaggaggaggaggaggctgtaGCGAAGAAACCGGCAGCAGCCAAAGATGAGGCCAAAGCTCCTGCAGCTAAACGAAAGGCTGCAGCCGCGACCCCTAAGGCAGGAAAGGCTGCAGCCGTGACCCCTAAGGCAGGAAAGGCTGTAGCCGCGACCCCTAAGGCAGCAGCTCAGAAGAAGACTgcgagcagcagcagtagtgaaGACAGCTCCAGTGAAGACGAGGCGCCCACTAAGACCCCGGTGAAACCTCCTGGCCCCGTCAAGACCCCTCCAGCTAAGGACAGTAGTTCCTCGGACAGCAGCGATGACAGcagtgatgatgaggaggaggagaagaagaagaaagtgtCAGCTAAAACAGTCAAAACCACCCCAGCCAAGACTGTGACCCCCAAAGCTGCTGCAGCTGCTAAGAAGGCAGAGTCCAGCTCTGAGAGCACAGACTCCAGCTCTGAAGAAGAAGTAGCAGCAAAGAAGCCAGCAGCTAAGGCTACCCCAGCTAAGGCTACCCCAGCTAAGGCTACCCCAGCTAAGGCTACCCCAGCTAAGGCTAAGCCAGCAGAAGACTCTGACTCCAGCTCTGAGGATGAAGAAGAGGCTAAGAAGCCAGAAGTAATAAGGGTTAAGTCCACAGCTGTCAAAGTAACGGTTACCCCTGCCAAGGAAGACTCTTCCTCAGACTCCAgctcagaggaggaggaagaggaggagaagggttcGAAGACGGTGAAAGTGGCGCCAGCTACAGCAACCGTAACGGTGGCAGAGGTGAAGGAGCGGGGGGCCAAGACTGTGACTGTAGCGGGGGCCAAGGCTACTGTGAAGGTGGTGGACGGCGACTCCTCTTCCTCGAGCTCAGAGGATGACGAAGAGGGGACGGTGAAAGCAGCACCAGCTAAGGCGACTCCTACCGTGACCCGAGGCAAGGCTGCTGAATCCTCCTCAGACTCTGACTCGAGCTCAGAAGATGAGGAAGAGGCTAAAAAACCAGCAGCCAAGGTGACTCCAGCGAAGACTGCCCCAGCTAAGAAATCAGACTCTTCCAGCTCTGacTCTGACAGCAGTTCTGAGGACGAGACACCAGCTAAACCTGCTGCAGCTGCTCCCAAGGCCCCAGCCAAGGCTGCTACAGAAAACAGCTCAGACTCCGACTCTTCTTCTGAAGATGACGAACCCCCAGCTAAGAAGGCTACCCCAGCCTCTGTTGCTAAATCAGCTTCCAAACCAGCAACCCCGGTTCCTAAATCAGCTTCCAAACCAGCCACCCCAGTTACTAAACCAGCTGCTACAGAAAACAGCTCGGACTCCGACTCTTCTTCTGAAGATGACGAACCCCCAGCTAAGAAGGCTACCCCAGCCTCTGTTGCTAAATCAGCTTCCAAACCAGCAACCCCGGTTCCTAAATCAGCCTCCAAACCAGCCACCCCGGTTCCTAAACCAGCCTCCAAACCAGCCACCCCGGTTCCTAAATCAGCCTCCAAACCAGCCACCCCAGTTACTAAACCAGCTGCAGCGGAGAGCAGCTCGGACTCCGACTCTAGCTCAGATGAGGATGAGGCCGTAGCTAAGAAGGCTACCTCTAAACCAGCCAAACCAGTGGTGACTAAATCAGCCTCTAAACCAGTCACCCCAGTGGTGACTAAATCAGCCTCTAAAACAGCCACCCCAGTGGTGACTAAATCAGCCTCTAAAACAGCCACCCCAGTGGTGACTAAATCAGCCCCAGCCAAGGCAGCAGCCGAGAGCAGCTCCGATTCAGACAGCTCGGACTCGGAGGACCAGGCTGCTGCTACGAAGAAGACCACCCCCAAACCTGCAGCCAAGAGTCCTGCCGTCAAGACACCGGCTAAAGCTGCAGAGTCGTCATCGTCTGAGGAGAGTAGctctgaggaagaggaggccaGTAAAAAGACTGTGAAACCCGCTGCCGCCCCCAAGACCACCCCCAAGACAACCCCCAAGACCACCGCAGCAGCCAGACCTAAAGCCAAGGAGGACAGCAGCTCTTCAGATGACTCCAGTGATGAAGAGGCAGCGCCCAAACCAGCAGCAGTGAAGGCTACAACACCAGCCTCGGCTAAAAAGGCAGCCGAAAGCAGCTCCGACTCTTCCGACAGTTCCGACTCGGAGGTGGAGACCGAGGCCGCCAAGGCGACGCCCGCTAAGCCTGCTCTGACCAATGGAAAGCCAGCTACACCCAAAGCAACCACCTCTGCAGTCAAGGCAACGAAACCGACCAAGGCTGCCGAGTCTTCCTCTTCCGAGGAGAGTAGctctgaggaagaggaggccaGTAAAAAGTCTGTGAAACCCACCCCCAAGACCACCCCCAAGACCACCCCAGCAGCTAAAACCAAGGAGGCCAGCAGCTCATCAGACGACTCTTCTTCGTCTGAAGAAGAAGAGGCAGCAGTCACCACTCCCATCGCTAACGgCATTGTAAACGGTAAGAGAAAAAAGGATGGAGAAGCCTCAGAGAACGAGGAAGAATTAACGACACCTAAAAataagaaaacaacaacaacaccacagaCGTTCCCTAAAGTCTCTAAGAAgATCAATGTACCTTTCCGTAGAATAAGAGAGGAGGAAATTGATGTGGATAACCGACTGGCTGACAACTCCTTCGACGCCAAGCGCGGGTCGGATGGAGACTGGGGCCAGAGGGCCAATGACGTGCTCCGCTTCACCAAAGGGAAGTCCTTCCGTCAcgagaagacgaagaagaagaggGGTAGCTACTGTGGAGGAGCCATCTCCCAGTCCGTCAACTCCATCAAGTTCGACAGCGACTGAGAACCTAGTCATCGTTTGTCActacccctcttcctcccctctcgaCCCAGGACTATCTGAGGACCAGGACGGTCtgcccccctccccatcccccgACTTCCCCCTCAGCAGAAACCTGACTGAGCTGAAGATCGTGAACTGAACTAGAGCTGAGACTGCTGCACTCACATAAGTGGCGGGTGATTTGTAGTTCGTACGTCTGTGTTAAACCAGTCCTTTTAAAATGCACATTTCTGTAATGGCGGAATGACGCTGTAGAAGTGGAGACTAGCTTTCCTTGAAATGGCACCCAGTCAAGACACCTCCCCTGCAGCCTTTCTTATGTcctaaacggcaccctattccctaagtagtgcactacttttgacctgatcgaaagtagtgcactacgtagggaatagggtgccgtttaggACAGAAGAAAGGCTGCAGGTGAGGTGTCTTGGCTTGTCTCCCCTTGTGCCTTCAGGACGAATCACGAAGGATTCATGTACATCATATAGCCACCAGGTGGCggtagtcagccaccaattcaGTTAAATATCAAGTCAAACTGTTTTCAGATTTCATTTCTCTCTCGGCCACTTAATATGTTgcttgttgtgaaattgttagccTGGATCTCACACATTCTGTCCAgtgatatttttttctctcttttctcccccagTCGTAAATTTAAATTCTGTTTCTTGTTTATTGCAGTTTGCATTGTGGGGAAAAGGGTTATTCGTTTGATTTTTGTATGGAACATGCAGACCTGTGGGTTTTGTTTTTGAGGGTTGAATGAAATTATCTTTTAGTTTCTCTTTTGGTATGATTTATTATGGTGTGGATATTTCGTAGTGGGTGCGTTCCAGGCTGACTACATTTGCAGTGGCCTACCAGATCTCACGCCCCTGGATAAGGATTCAACCACTGCAATGTAGTCAGCCTGGAACGCACCCGTTTTAGATCAGtatttacgttttttttttagcCTGGGAGTATCAGGGATCATCCAACTGTTATTACAAGCTGCAGTCTAAAAATAACTTCCTGGGTCGCGTTCAGTAGGATGTACTGAAACAAAACGTTTTGAAACGGTAAACTCCGTttctaaaaatacatttaaaaagtaaTTCTGTTGTGCTTACTGAACAGGATCTGGTTGCATCTGAAATGGTACCCCGTTCACTAGTAAGTAGTGTACTGTAGGGAATACACTGCCATTTCAGATGTGATGTTGATTCCTGCTGAAGTCAAAACTGCCAGCCTATTGGTTTGGTGGTTCATTGGTTCAGCAGCCAACCAACCACAAGTTGTTTTAATTTTGTGAATTTTCAATTTCCTGTTTCTAGTCTTATTTTCTTATTGAGTATTGTTACTACTTGAATAAAATACCTAGTTGTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1526960 lncRNA upstream 34641 6325197 ~ 6325947 (+) True G1335571
TU1526956 lncRNA upstream 45258 6264154 ~ 6315330 (+) True G1335567
TU1526931 lncRNA upstream 110668 6247824 ~ 6249920 (+) False G1335553
TU1527017 lncRNA downstream 3973 6386529 ~ 6473988 (+) True G1335613
TU1527030 lncRNA downstream 8294 6390850 ~ 6391132 (+) True G1335618
TU1527059 lncRNA downstream 80910 6463466 ~ 6464016 (+) True G1335645
TU1527067 lncRNA downstream 99224 6481780 ~ 6573646 (+) True G1335653
TU1527077 lncRNA downstream 123697 6506253 ~ 6509089 (+) False G1335663
XM_036945865.1 mRNA upstream 2739 6333340 ~ 6357849 (+) True LOC110491277
XM_036946039.1 mRNA upstream 71444 6252683 ~ 6289144 (+) False slc29a3
XM_036946041.1 mRNA upstream 71444 6252683 ~ 6289144 (+) True slc29a3
XM_036945864.1 mRNA upstream 143766 6123627 ~ 6216822 (+) False LOC118939486
XM_036945848.1 mRNA upstream 688482 5658730 ~ 5672106 (+) True ly6pge
XM_036946050.1 mRNA downstream 144239 6526795 ~ 6651585 (+) True mcu
XM_036946051.1 mRNA downstream 297159 6679715 ~ 6704779 (+) True oit3
XM_036945866.1 mRNA downstream 642414 7024970 ~ 7073332 (+) False kif20ba
XM_021564636.2 mRNA downstream 743191 7125747 ~ 7128548 (+) True zgc:65997
XM_036946066.1 mRNA downstream 748491 7131047 ~ 7147600 (+) False pank1a
TU1525676 other upstream 655642 5703835 ~ 5704946 (+) True G1334592
TU1525602 other upstream 839358 5519940 ~ 5521230 (+) True G1334530
TU1525057 other upstream 1422909 4734789 ~ 4937679 (+) True LOC110491218
TU1524854 other upstream 2019720 4339838 ~ 4340868 (+) True G1333963
TU1523350 other upstream 3129574 3230199 ~ 3231014 (+) True G1332826
TU1527127 other downstream 208420 6590976 ~ 6591915 (+) True G1335704
TU1527209 other downstream 381756 6764312 ~ 6768586 (+) False G1335763
TU1527336 other downstream 652318 7034874 ~ 7057970 (+) True kif20ba
TU1527405 other downstream 676345 7058901 ~ 7059543 (+) True G1335921
TU1528044 other downstream 724915 7107471 ~ 7108714 (+) True G1336428

Expression Profile