RNA id: XM_036946153.1


Basic Information

Item Value
RNA id XM_036946153.1
length 2756
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC100136067
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 11967289 ~ 11991296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGCGTCCAAGCCTTGGTGGTCAGCGCAGACTTAAAGTGAACGGGCGCGCACTTCCAACGGCCATTCAGTCGGAAGAGGGGACACAGTGAAGGTGTGCTGCTGTGCCGTTTAGTCATCCCTCCCTCTGACCGGTTAATAGATAGATAGAAACCCCCGTCGCTGTTGTTTTACTCCCCCCCCGTTAAACGGTTAGATCGATCATGTACCGGTACTTCGGGGAGCTGTTATCCCGCGGGGCGGGCAGTGCCCTGGCCTCGGGCTGCGTGGAATCTGCTCTCCCGGCATCGGCCGCTCTGATGCGGGTCCGACAGTATAGTGAACAGCCCGACGACCCCAACTTCTTTCGCATGGTGGAGGGTTTCTTCGACCGCGGAGCCGCCATCGTTCAGGACAAGCTTGTTGAGGACCTGAAGAGCAGGGAGACCCCCGAGCAGAAGATGAAACGAGTGAAGGGGATTCTCCGCATCATCAAGCCCTGCAACCACGTCCTCAGCGTCTCTTTCCCCATCAAGAGGGACAACGGAGagtgggaggtggtggagggctACCGCGCCCAGCACAGCCAGCACAGGACGCCCTGCAAGGGGGgGATCCGTTACAGTGAAGAGGTGTCTGTTGATGAGGTGAAGGCTCTGGCCTCTCTGATGACATACAAGTGTGCCGTGGTCGatgtacCATTCGGGGGGGCTAAAGCTGGTGTCAAGATCAACGTCAAAAATTACTCTgacAATGAGTTGGAGAAGATCACTAGAAGGTTCACCATTGAGCTGGCCAAGAAAGGTTTTATTGGGCCTGGTATTGATGTTCCTGCTCCTGACATgagcactggagagagagagatgtcctggATCGCTGACACATATGCCAACACCATCGCACACACCGACATCAACGCCCACGCGTGTGTGACAGGCAAGCCCATCAGTCAGGGCGGGATCCACGGGCGTATCTCGGCCACCGGTCGCGGAGTGTTCCATGGCATTGAGAACTTCATCAACGAGGCGTCCTACATGAGCATGCTGGGCCTGACCCCCGGCTTCCAGGACAAGACCTTCATcatccagggcTTTGGTAATGTGGGTCTCCACTCCATGCGGTACCTCCACAGGTACGGTGCTAAGTGTGTGGGCATCGCTGAGTATGACGGCAGCATCTACAACCCAGAGGGCATTGACCCCAAGCAGCTGGAGGACTACAAACTGcaacACGGTTCGATCGTAGGTTTCCCCGGGGCTAAGCCATACGAGGGCAGCCTTCTGGAAGCTCAGTGTCACATCCTGATCCCTGCCGCCAGCGAGAAGCAGCTCACACGAAACAACGCCCACAGGATCAAGGCCAAGATCATTGCTGAGGGAGCCAACGGCCCCACCACCCCTGATGCTGACAAGATCTTCCTGGAGAACAATGTCATGGTCATCCCTGACATGTACCTGAACGCCGGTGGTGTGACAGTGTCCTACTTTGAGTGGCTGAAGAACCTGAACCACGTCAGCTATGGAAGACTCACCTTCAAATACGAGAGAGACTCCAACTACCACCTCCTCAtgtctgttcaggaGAGTTTGGAGAGGAAGTTTGGAAAGCAGGGAGGACCAATCCCTGTTGTCCCCACCGCTGACTTCCAGGCCAGAGTCGCTGGAGCTTCTGAGAAGGACATTGTCCACTCTGGGCTGGCCTACACCATGGAGAGGTCTGccaggCAAATCATGCGTACAGCCAGTAAGTACAACCTGGGTCTGGACCTGCGGACGGCTGCGTACGTCAACGCCATCGAGAAGGTGTTCAAGGTCTACAACGAGGCCGGCATCACCGTCACATGATCACCTTGTCACAGCCAGACCACTCCCACACCACCCTGCTATTGGTTCACCCTGCTTCCCCATTTTTCCAATCAGCCTTCAGTACATACCAGTGTTTACATTAGAGACCCCCGCCTCCcgtttatacacacacactgacacgtaCTGTGTTCTGTGTCCCATGACCTCGCCACATCTCCCTGTATCACGTGGGTAACTCAGTATTCCTGTGTCCCATGACCTCACCACATCTCCCTGTATCACGTGGGTAACCCAGTATTCCTGTGTCCCATGACCTCGCCACATCTCCCTGTATCACGTGGGTAACCCAGTATTCCTGTGTCGTCCTGTTTCACTATTGTCGTTCAGTTTGTGAAAGAAGCAGATTGTAGCAGGAAGATAGCTttaagacccccccccctcctataaGAGTTCCCTTTTGGCCATTTTGTCTTGTTTGACCCTTGTGTTGCCATGGTTTCAGACCACAACAATGAAGTTGCCTTAGCTCTGACGGAGCTCTGTACTGAAAAGACACACATACTGAAATCCATTTAATGTTAACTCCGGACATATACTTTATTTAAAGAAAGAGATAGTTTTAAACTCTCACTTTATGTCAGGGAATGGTGATATATGTGTTCCTCGGTTCTCCTCGCAgcggggttagaggtcagggttagaggtcagggctcAGGGTTGTGCTGAGGAACACAGGGTTCTACTCCACTATATCAGTCCCCCCACAATCCCCCCTACCTTCTGCTCCTATCTTGTCCAATCTGACCCTCCCCCAAACCCTCCGCTCcgccatgagagagagaggaggagaggatcatGGGAACAAGCGTTCTCCTTCTCCAGAAAGCCGTCCAAGCCCTTGCACGGAAATTGCTTGGGGAAATTTGTATtgcctttttttttgttgaaaaccAATAAAATTCTGAGAACTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1533489 lncRNA upstream 9425 11957300 ~ 11957864 (+) False LOC110492879
TU1533440 lncRNA upstream 156780 11808608 ~ 11810509 (+) True G1341234
TU1533433 lncRNA upstream 166892 11799894 ~ 11800397 (+) True G1341228
TU1533415 lncRNA upstream 228987 11737731 ~ 11738302 (+) True G1341210
TU1533394 lncRNA upstream 288781 11677812 ~ 11678508 (+) True G1341192
TU1533349 lncRNA downstream 921 11992217 ~ 11993860 (+) True G1341152
TU1533513 lncRNA downstream 36574 12027870 ~ 12028652 (+) True G1341297
TU1533527 lncRNA downstream 63704 12055000 ~ 12055394 (+) True G1341311
TU1533530 lncRNA downstream 67098 12058394 ~ 12058924 (+) True G1341314
TU1533921 lncRNA downstream 142091 12133387 ~ 12133748 (+) True G1341640
XM_036946150.1 mRNA upstream 8431 11952562 ~ 11958858 (+) False LOC110492879
XM_036946152.1 mRNA upstream 8431 11952562 ~ 11958858 (+) False LOC110492879
XM_036946151.1 mRNA upstream 8431 11952888 ~ 11958858 (+) False LOC110492879
XM_036946135.1 mRNA upstream 80701 11854692 ~ 11886588 (+) True LOC110492827
XM_021564728.2 mRNA upstream 173142 11790166 ~ 11794147 (+) True LOC110491349
XM_036946159.1 mRNA downstream 251769 12243065 ~ 12271829 (+) False LOC110492833
XM_036946160.1 mRNA downstream 251769 12243065 ~ 12271829 (+) False LOC110492833
XM_036946161.1 mRNA downstream 251769 12243065 ~ 12271829 (+) False LOC110492833
XM_036946162.1 mRNA downstream 251769 12243065 ~ 12271829 (+) False LOC110492833
XM_021564792.2 mRNA downstream 392451 12383747 ~ 12391454 (+) True LOC110491387
TU1533491 other upstream 8492 11957526 ~ 11958797 (+) True LOC110492879
TU1533369 other upstream 184398 11781728 ~ 11782891 (+) True G1341172
TU1531596 other upstream 1907159 10059878 ~ 10060130 (+) True G1339525
TU1531081 other upstream 2264909 9701975 ~ 9702380 (+) True G1339045
TU1531053 other upstream 2340889 9625939 ~ 9626400 (+) True G1339018
TU1533979 other downstream 232477 12223773 ~ 12229068 (+) True G1341689
TU1533962 other downstream 401658 12392954 ~ 12395733 (+) False LOC110491388
TU1533964 other downstream 401658 12392954 ~ 12396813 (+) True LOC110491388
TU1533966 other downstream 410940 12402236 ~ 12403422 (+) True LOC110491390
TU1534148 other downstream 476144 12467440 ~ 12469121 (+) True G1341820

Expression Profile