RNA id: XM_021564772.2


Basic Information

Item Value
RNA id XM_021564772.2
length 2981
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110491374
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13285621 ~ 13334372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTTCACTCATGCACCGAGATTTGCACATTTCCAGGATTTTACAGTTACGTCGCTGTTCGTGATTAGTAGCGCAGTAAAAACGAGAACTGGGCTGTGCATTAGTGAAACTGCTGTAGGAATATAGGGTGCCTTTACATTTTCTCCATTTATCGGAGGCAAGGACTCTTCTATCGTACGCCACACAATTTTTTTCTGGGTCTATTTGACAGGTTTCGTGTCTCGGGGAGCTTCTGACTGCACACCTGATGCATTTCAGGTCAAGGACAAAATTGTCACAGCAAGTTCAATCACAAACCTTGGTAGGATGGATTAACCTCTAGATTTGCCTGACTGGACACTCCAGGTGTCGGCAGCACCCAATGTCCTTTCTACATGATGAGTGTGACCTGAGGAGGACTCTGGGTTTGTTAGACCGAACCGCTAACACTTCTGGACTCTTCCACCCAAGTTTCTCCCCCCGTTTGCCACTCGTACGGCACGGGGACTGACATGAAGAAAGTGGCCCAGTGGTCAACGGAGGACGTGCGCCAGTGGCTGACAAATGAGGGAATGCAGGAATACTCTGAGGCCTTCCTCCACCTGGATGGCCAGGGCCTCCTGCAGCTCTCCAAGGCGGACTTCCAGACGGCCCCTCTGGTTCTTGTCACCTCGGACAGAGGCAGACAGCTTTTGGACAAGTTGGAGACTCTCAGAatagagcaccacattgaagcacATAAAAATGGGCATGCCAACGGACACTCCATCTTGACCGTCATCAATGAGGTAAATGGGAACAAGCCCAAGAGTAACGGTCTGATCAATGGGTTTCACAAGGAACGGGTTCAGATCCACATGCCTGAGATCAACCGCTCTCCGTTCCCTGAAGAGTGGGGGAAGACTGGCGTGGCTTGCATCTACGCCATGGTCTGCTTCGTCTGCACCACCATCATTATCTCTGTGGTCCACGAACGCGTGCCTCCCAAAGAGGCTACTCCGCCCCTGCCAGACAAGTTCTTTGACTTTTTTGACCGAGTAGACTGGGCTTTTTCCATATGCGAAATCAACGGCATGATACTGGTCGGCCTGTGGCTTCTACAGTTGACACTGTTAAAATATAGGTCCATCGTTGGTCGACGTTTCTTCTTCATCGTTGGCACACTGTACCTATACAGGTGTATCACCATGTACATAACCACACTCCCTGTgccaggaatgcatttcaagtgCTCTCCTAAGCTGTTTGGTGACTGGGAGTCCCAAATGCGGCGAGTCATGAAGATGATTGCAGGAGGAGGCCTCACCATCACTGGCTCGCACCACATGTGTGGGGACTACCTTTAcagtggccacacagtcatgctGACACTCAGCTATCTCTTCATTAAAGAATACTCTCCAAAACGGTTCTGGTGGTACCATTTGATCTGCTGGCTGCTATGTGCTGTAGGCCTCTTCTGCATTCTCTTGGCTCATGACCACTACTCCATAGATGTGGTGGTGGCTTACTTTATCACCACACGCCTATTCTGGTGGTACCACACCATGGCCAACCAGCAAGTGCTGAAGGAATCATCGCAGAGCAACTTTTTCTCAAGGGTGTGGTGGTACCGAATCTTCCAGTACCTGGAACAGAATGTCACAGGCATCGTCCCTCGGAACTACCAGATGCCGCTGTCATGGCCACCGGCCCAATGGAGTCAAGTGAAGTACAGCCGTGTTGACACACAGTGCCCGTGACAGCGggaagtgacccccccccccccccccccccaggaggaCATGATGGTGGGTCTCTTAACGACCATCTCCCTTTAACGTTCTCCTGTAACATACACTCCAGTCCAACTGACTAGTACTGTGACAACCATCGTTTCAGCCAAAACATTTCACATTGGAAAACAATCATTCTATCCTCTCGAGGCTACTCTGAAAGTAATGGTTTCCAGTGGGTGGATCGCAAGCATTTCAAAAGTGGGTCCAGATCTATTTCAACTCGCAACAGGAAATCTATAGTTAAAGGCTAATATCTCCCTCTGTAACCGGTTACTGAAATGTTATTAAATAAACATGTTTGTCACAGCGATTGGGCTGTTCCGAAAGTTTGGTGTTATCATGCTCAGATGTTTTACTAAGTTTTGGTTCAAAATAGCTTTGAGAACTGACCTGTCGTGAAGCAGGAGGCGTTTTTTTTGTAGTGACTTACATTTTTGTAGTTGTCTAAAATAAGCTTGGCCAAGGTGTAAACTATTTTCTAAGCATATAACAGGTTTATTATTCAAATTAATGCTTTAGATTTTTACAGTTAGGAGACTATAGCAAAAAGGAGAAAATAAATTAGTAACAATATTCCTCAGTGCCTTTCTTGTTGTGATTGTACAGTAAGTGTATCAGTGTCCTCATTAATGTTGACTTGAATGACCGTTTTTAAAGTGCTACATCAGTATTTACACTTGAACAGATAGGAGGGTGTTTAAATGAACCTGATGCTGATCACCAATTTACAGCATAGACAGTTGAGCAATTACGACTCCATGACATTTTCTCCCTGTTTCTGAATGTAAAAAATCATGACATTCTTTTAACCATGTCAGTGTCTTTCCAAGTCGGTCATGTTTGCTTAAAAAAAAGAACATTTCATATTTTCCATTGATTTATTTATTACATCGATCATTTCTTGTGTTTTTGCTTGGGATATTGGATTCCCATGTCATTTCTTGCCTATTATGCCAAATAGCTGCATTGTTTGGGCTGTCCTTTGACCCAAAGGTTAGGTcagtgtgatggagagggaggTTAAAAGCAAGGTTTTATTGAGTGGTCCTGACAATTTCTTTCTCAGCTTACTGATGATGACTGACCCAAATGCCCCTCTCCTCAATTTTATATGTGTACCTCAGAAGTGTCGTGTTAACCAACCAATGAGAAGAGCTGATTATGGTGTAACCATGGAAGAAATtaatccaaaaggaaataaataATATTTAGCACACCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1535626 lncRNA downstream 930 13284363 ~ 13284691 (-) True G1343095
TU1535831 lncRNA downstream 4255 13281165 ~ 13281366 (-) True G1343289
TU1535830 lncRNA downstream 4640 13280604 ~ 13280981 (-) True G1343288
TU1535827 lncRNA downstream 6919 13278398 ~ 13278702 (-) True G1343285
TU1535825 lncRNA downstream 23020 13261455 ~ 13262601 (-) True G1343283
TU1535622 lncRNA upstream 2158 13325854 ~ 13326937 (-) True G1343091
TU1535619 lncRNA upstream 6525 13330221 ~ 13333362 (-) True G1343088
TU1535872 lncRNA upstream 74908 13398604 ~ 13398840 (-) True G1343330
TU1535873 lncRNA upstream 76335 13400031 ~ 13400325 (-) True G1343331
TU1535874 lncRNA upstream 77160 13400856 ~ 13401124 (-) True G1343332
XM_021564757.2 mRNA downstream 42140 13059005 ~ 13243481 (-) True LOC110491369
XM_021564758.2 mRNA downstream 42598 13059005 ~ 13243023 (-) False LOC110491369
XM_021564754.2 mRNA downstream 47977 13059005 ~ 13237644 (-) False LOC110491369
XM_021564756.2 mRNA downstream 48226 13059005 ~ 13237395 (-) False LOC110491369
XM_021564759.2 mRNA downstream 220061 13059005 ~ 13065560 (-) False LOC110491369
XM_036946220.1 mRNA upstream 21490 13345186 ~ 13355947 (-) False LOC110491375
XM_036946219.1 mRNA upstream 21490 13345186 ~ 13356029 (-) True LOC110491375
XM_021564779.2 mRNA upstream 97450 13421146 ~ 13464395 (-) False rnls
XM_021564781.2 mRNA upstream 97450 13421146 ~ 13464395 (-) False rnls
XR_005036444.1 mRNA upstream 97450 13421146 ~ 13464395 (-) True rnls
TU1535820 other downstream 33953 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 585453 12698986 ~ 12700168 (-) False G1342941
TU1535453 other downstream 585453 12698986 ~ 12700168 (-) True G1342941
TU1533742 other downstream 1266107 11995489 ~ 12019514 (-) False G1341480
TU1536006 other upstream 261440 13585136 ~ 13620740 (-) False G1343452
TU1536004 other upstream 294313 13618009 ~ 13634178 (-) True G1343452
TU1537992 other upstream 1927681 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 2375289 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 3600826 16924522 ~ 16929432 (-) False G1347067

Expression Profile