RNA id: XM_036946219.1


Basic Information

Item Value
RNA id XM_036946219.1
length 2226
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110491375
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13345186 ~ 13356029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTAGGGGGCATCTGTCAAGGAAATAGCGCCGAGCTTCACGCTGAAAGGGACAAGAGCAAGAGTGGAAGCGCTAGTCATCTAAGAAGATGGTGTTGAAGGAGATTCCAACTGAAAGTATTTCCCAGCCCTTGGGCCGGAATGAAGTCTTTGGTTTACTCTTCCGACTGACCATATTTGGTGCAGTCACTTACTTCACCATAAAGTGGATGGTTGATGCCATTGATCCCACAAGGAAACAGAAAATGGAAGCACAGAAACAGGCAGAGAAACTCATGAAGCAGATCGGTGTGCAGAATGTCAAGCTCTCAGAGTATGAGATGAGCATTGCAGCACATCTGGTGGACCCGTTGACCATGCAGATCACATGGAGTGATATTGCTGGCCTAGATGAAGTCATCACTGAGCTGAAAGACACTGTCATACTTCCCATCCAGAAGAGACACCTGTTCAAGGGATCCAGACTGCTTCAGCCACCAAAAGGTGTGCTGCTGTATGGACCACCTGGCTGTGGGAAGACGCTGATCGCCAAAGCAACTGCCAAAGATGCTGGTTTCCGCTTCATCAACCTGCAGCCTTCCACCCTCACAGACAAGTGGTATGGAGAGTCCCAGAAACTGGCTTCTGCCGTCTTCTCTCTAGCCATTAAGCTCCAGCCTTCAATCATCTTCATAGATGAGATTGACTCTTTCCTGAGAAGCCGTTCCAGCTCTGACCACGAGGCCACAGCCATGATGAAGGCTCAGTTCATGAGCTTGTGGGATGGGCTTGAGACGGACTACAACTGCCAGGTCATCATTATGGGGGCCACTAACCGTCCACAGGATCTCGACTCCGCCATTCTGAGGAGAATGCCCACAAGATTTCACATAAATCAGCCTAATCGCATGCAGAGGGAAGAAATCTTGAAACTCATATTGAAAAATGAAAATGTGGATCCCGCTGTTGACTTTGTTGACATGGCGAAGGAGACTGACGGATTCTCAGGAAGTGATCTCCGAGAGATGTGTCGGGATGCTGCTCTGTTATGCGTGCGGGATTTTGTCCATAACACCCATGCCGATGAAAGGATCCAGGATCAAATCCGGTCCATCAATCAGGACGACATGCAGACTGCCAGGCAGAAGATGAGGAAGTCGAAGTCGGCAGACGGACAGACGGTTCTGATTCATTCTACTCTGGATTGAGTCTTGACATGCAAAGGAGAACTATTAAGCGCCTGGATATGCTTTCCTTATTATTTTCTATGTATGTAGAGTACTTACTGGTGGAGAGAACTTGAAGAGATATACATAAGTGTAATGTCTATCATAACATCACTTTGTAATGTCTTAGCTCATTTGTTATTTTAAGAACAGTTAGTTCAATGCATTGACATGAAATATTTCTGTCAATTCTATTTGTTATGTGGAAGTTAGGCGTTCCGTGATACTTATGTTGGCATTAGTGTCTTATGTATCTGGCCAACCAAGGTCTCAATGAAACTGGCTCTGAGACTGCAAAGTTTTGGCACAGCCATGGATCCTTTCAGGTTTGATAGTACATAATTGCCTCCCTATTACTTATGACACACAGCAATAGACTTAGCCTTGGGCTTTTATCTGAACATCACATGTTTCTTTTGgtactgttttttttctttctctagGAAAGCAGTTTATCGAACTAGTGTAACATCGGTAATAAAATTTGCCACTTATAGTTGGCACTGTCATCGTTCAACTATTAGCTAGTTGTACAATTGAGTGGTTCTCAGAATTACGAATTAGATCAGAAGTTATCATGCATGCTAAAATATTTATCAGAACAATTCAACTCCTAtttgaaagtgaattatcactggATGTTGTGAAGAGAGCATGGTACCAGATGCAGAGACATGGCCTTCTTCAAACATCAGGAAACCTGCTTTGTGCTTGTATGCCCTGGTCTTCAGCCCAGGGTTAATTTACAGTAGAATCTAATAACTGCTTGTGGTGATCGTCTTGTCTTATAGTTTCTGTTTATCCCTTGTGATGACCAGGTTGATTATTTCTACATGACAAACTTTCTATGGAcattttgttttggggggggggggggtgtgattgGTGGAAATTGTAGTTTTAATTATTGATCTTTGGTTTTGGTAAAATGCTTGCTTTGCTTTTTATATTGACTAATTCATTTTTAGAATTTGTCTTACCCTGAATTCTGGTGTCTGCTAAAATAAATTACACCAATATTG

Function

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1535619 lncRNA downstream 11824 13330221 ~ 13333362 (-) True G1343088
TU1535622 lncRNA downstream 18249 13325854 ~ 13326937 (-) True G1343091
TU1535626 lncRNA downstream 60495 13284363 ~ 13284691 (-) True G1343095
TU1535831 lncRNA downstream 63820 13281165 ~ 13281366 (-) True G1343289
TU1535830 lncRNA downstream 64205 13280604 ~ 13280981 (-) True G1343288
TU1535872 lncRNA upstream 42575 13398604 ~ 13398840 (-) True G1343330
TU1535873 lncRNA upstream 44002 13400031 ~ 13400325 (-) True G1343331
TU1535874 lncRNA upstream 44827 13400856 ~ 13401124 (-) True G1343332
TU1535881 lncRNA upstream 60396 13416425 ~ 13416648 (-) True G1343339
TU1535608 lncRNA upstream 62148 13418177 ~ 13419595 (-) True G1343078
XM_021564774.2 mRNA downstream 10814 13285621 ~ 13334372 (-) True LOC110491374
XM_021564773.2 mRNA downstream 20820 13285621 ~ 13324366 (-) False LOC110491374
XM_021564772.2 mRNA downstream 21490 13285621 ~ 13323696 (-) False LOC110491374
XM_021564771.2 mRNA downstream 52256 13285621 ~ 13292930 (-) False LOC110491374
XM_021564757.2 mRNA downstream 101705 13059005 ~ 13243481 (-) True LOC110491369
XM_021564779.2 mRNA upstream 65117 13421146 ~ 13464395 (-) False rnls
XM_021564781.2 mRNA upstream 65117 13421146 ~ 13464395 (-) False rnls
XR_005036444.1 mRNA upstream 65117 13421146 ~ 13464395 (-) True rnls
XM_021564782.2 mRNA upstream 126172 13482201 ~ 13491972 (-) False ankrd22
XM_021564783.2 mRNA upstream 126172 13482201 ~ 13491975 (-) True ankrd22
TU1535820 other downstream 93518 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 645018 12698986 ~ 12700168 (-) False G1342941
TU1535453 other downstream 645018 12698986 ~ 12700168 (-) True G1342941
TU1533742 other downstream 1325672 11995489 ~ 12019514 (-) False G1341480
TU1536006 other upstream 229107 13585136 ~ 13620740 (-) False G1343452
TU1536004 other upstream 261980 13618009 ~ 13634178 (-) True G1343452
TU1537992 other upstream 1895348 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 2342956 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 3568493 16924522 ~ 16929432 (-) False G1347067

Expression Profile