RNA id: XM_021564818.2


Basic Information

Item Value
RNA id XM_021564818.2
length 3063
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110491403
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13932022 ~ 13936223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGATTGAAAACGCGGAGGCCATTAACAGTACAGCTGGACTGCAGAGGGGAAGGGGGCGTGCCACGCAGCATTCAGGAACCTCAACCATATTTCATCGGAATGGCTAAATAACATTTTTTTCGATTTAGTTTTTAAAAAGTTAGTCCGTTTATTCACCagcaacatttaaagtgtttgTCTTTCCAATGAATTGCACAAGGGTCCTCCACATGTTGAACCCCAGGCCAATGCCAGGTCCCATAATGCCAGTAGATGTAGCCATGAGGATCTGCCTGGCAAGCTCTCCACCCCTCCGCAGCTTCCTCAGCACGTACGAGGACTGCCGATCGCGAAACCTGGTCAACCGTTACAAACCACTGAGGCCATGCATCAGCTCCAAGCAGCAGCTAGAGGACTCCAGCCTGGGATGGAAGAGCGCCAGGGCCAAGGGGAAGAAGCGGGTGGTCTTTGCCGACTCAAAAGGCATGTCCCTAACGGCCATCCACGTGTTCAAGGAGTTTGAGGAGGACCCACTGTCTGACCTGCAATTTGACCTGTCTGACCTGGCCAATGCCACCGCTGGCCTCAAGGTCTCCGTGGAGAAAAGTTTTACTCTGGATTTCCCACAGCCCGCTGCAGATTATCTGGACTTCAGGAACCGGCTCAAGAAGAACCAAGTATGTCTGGAAAACTGCATACTCCAGGAACGGTCGCTCACCGGCACTGTGAAAGTCAGGAACGTAAGCTTTGAGAAATCGGTCTCCATCCGGCTAACGTTTGACTCGTGGAAAACCCACACGGACATTGCTAGTACGTACCTAAACAATGTGTACGGTTGTTTGGACACTGACACCTTCGCGTTCACTGTCGACCTGCCAAGTTCTGTGCCCTCACAGGAGCGTGTGGAGTTTTGCATATGCTTCACCACCCAGGATCAGACGTACTGGGACAACAACGATGAGAAGAACTACAAGTTGCTCCACAACGACACAGATGCAGACCAGACCAGCAACCCCATCATCCAGACCACCGCACCAGTGGAGTTCAAGAGCGACGGCAAGAGGCCGGAGATGGAGTTTGACCAGTTTGGGAGCCCGAGAACGTCCAGTGGATTCTTCCCTGAATGGCAAAGCTGGGGACACATAGAGAATACAACCCCATACTGGTGAAGCAACAACAAGGCTTTTATGAGAAATCCACAAGCTTCTCCAACAGAATCAACTCCTAATTGCTTGATGTAAGAGGAGTGACAACAGAAAATGTAATAGTATGTACACATGGGAGTGCtggctgacccccccccccccccccccccccccccccccccccctcaacaatGAAGATATAACCACAATCTGAACAGTTAAGATGTTCAAGTCAACAGTTGAGGTCATTGTGGGGCTTTAGTGGGCATGTTTGTTTTGTCACAATGGAAAGGTTCATAATGGGTTTCTTTCTCTTCATGTTTGGGGGTATATGTGAAGGTATAGAAATCTACAAACAACAGTTTGAGCCTGTAAGCATCTTATCATCCTGTTAACCCCCTAATCACTGTGACCAGTACTCAACATAAAGCATTGTGGTAAAATGCCGCCATATAGCTAGAATTAACAACAAATAGCAAAGTGCATTTTAAGGTTGAGATATCTAGAAATTGGTTAAGACTTTAAAAGTGTACAATTTTTGTAGTGAATTTAAAAAATGTGGTAAATCATGAGTTGTTGTAACATAGATGCCTTCCTTTTATAATGTTAATTTGATTGTCCATTAAGCTGTTTGTAATCTCGGCCACCAGCCCGCTCACTCTGTCGAGACTACTCTATGCGCCAGCAATCCGAGCCTGGGGATGAGGTTAAGCTGTTGGTCATACAATGGCATTACTTCACCACCTGTATACACAGCGAGTAGGGActggattcaatccgtatcgcgaAAGATCTGTTAAAATTtcaaggtaatttccgattgagccgaaaTATGCAACGTTTACCGTAAATGCAGTCTCCACGAACataggaacattgcctttaaatttaatTTGCGCTATAACTCGGATCTGTCGCAATACTCCAGCTCTACGGATTTAATCTAGCTCTAAGGCTTTTTCAAAAAGAGAAAGATAACTCCAGATTTGGGAGCCTGCACTTAACATTTTGTACATGGAGATCTGTTTTGGTGAGTTTTATATCAACAGAATTAGCTTTACTTGCCCTGTAAGAGATGGAACTATTCCTTGCCGTTAGACATAAAGGTAAGCCATCAAAATGTCAGTATAACGTAAGTCGCCCGAATGTTGACGGACATGGTTGACAGTTCCAGAGCAGTCTTTGCACTGACCGAAATACAGTATGCCTTTTAAATGTGAGAATGTGAAAGAATGAGACGTTGAAAGTGGAATAATTTGGTACAGCATGACGAACTTCATATTGAAGTTGCTTCAGTGTTTCATGGCACCGTTTGAGTGAGGACTTTCAGGTAAACAAAAAAGAAAAGCAATACAGGTAAATATGCATGACTATACCCCAGCATATTATCAACTAGGTGTAGGCCTAAATGGAGCACCTACCTTTGTTTTGCACAAAGGATTTCATACATACGTCCATTGTATTTTTGAAAAGCCTTTACATGCAAACGCATTTTATATGCTCTTCCTAACCTCTTAATGTTTGCTGCTACTGTATGTAAGTGCTATTCTATCTTCAATGTGTTTCATGAACCCGTGGTATGTGAATGCTCCTATGGGAAATAGGGGAAAGAGAATGAGGAGAGTGGGGATGTTATTTAAGGAATGTACGACTAAGTAAGGGAAGTGTTTAAAAGGGAAATGAATGGAAAAGAGGTCAGTGTTAGAGGGCTATGCCTTGGGACTGAGGCTTCAGAGTTTACCAGGAAGTGGTGAACATTGTCAGCTGCTTTGTTTGTTCAAGTGTAAATAAGCATGAGGCAGAATGCAAAGGGCTATGACACGAGCCATGGTGTCTAACCGCCAGCATCTTTTTCTACTGCAAGGAAGGGTCTCTGTGTGTGAAATGGTTTACTGTTTTCTCTGTTCCTTTCAGAAATAAAATCTAATGTTTATAGTG

Function

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1536141 lncRNA downstream 83937 13834854 ~ 13848085 (-) True G1343574
TU1536116 lncRNA downstream 129176 13800704 ~ 13802846 (-) True G1343549
TU1535616 lncRNA downstream 192319 13736984 ~ 13739703 (-) True G1343085
TU1536020 lncRNA downstream 285657 13623964 ~ 13646365 (-) True G1343460
TU1536014 lncRNA downstream 323069 13600786 ~ 13608953 (-) True G1343456
TU1536205 lncRNA upstream 17102 13953325 ~ 13953548 (-) True G1343637
TU1536207 lncRNA upstream 19493 13955716 ~ 13955937 (-) True G1343639
TU1536208 lncRNA upstream 19859 13956082 ~ 13956367 (-) True G1343640
TU1536211 lncRNA upstream 21376 13957599 ~ 13957822 (-) True G1343643
TU1536213 lncRNA upstream 24307 13960530 ~ 13960800 (-) True G1343645
XM_036946242.1 mRNA downstream 167101 13758121 ~ 13764921 (-) True LOC110492837
XM_036946243.1 mRNA downstream 169583 13758121 ~ 13762439 (-) False LOC110492837
XM_036946236.1 mRNA downstream 178578 13741193 ~ 13753444 (-) False LOC110491398
XM_021567351.2 mRNA upstream 47327 13983550 ~ 13985369 (-) True LOC110492880
XM_021564828.2 mRNA upstream 80712 14016935 ~ 14046109 (-) False LOC110491405
XM_036946249.1 mRNA upstream 80712 14016935 ~ 14099297 (-) False LOC110491405
XM_021564821.2 mRNA upstream 80712 14016935 ~ 14100687 (-) False LOC110491405
XM_021564823.2 mRNA upstream 80712 14016935 ~ 14100687 (-) False LOC110491405
TU1536004 other downstream 297844 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 311282 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 680354 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 1231854 12698986 ~ 12700168 (-) False G1342941
TU1537992 other upstream 1315154 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 1762762 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 2988299 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 2988299 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 2988299 16924522 ~ 16929432 (-) False G1347067

Expression Profile