RNA id: XM_036946259.1


Basic Information

Item Value
RNA id XM_036946259.1
length 5518
RNA type mRNA
GC content 0.48
exon number 17
gene id grid1b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14517319 ~ 14907970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTCCCTCCTCTGCAGTTTGCAGATTGTTATGTTTCAGACTCTCGCTGGATAGAGCGAGAGCCACAGAGAGCGCGCCGGATTCTCAGCCTTACTTACCGAAAAGCCTTTCTGTCCAACCGCCACCTCCCTTTCCCACTAACGTATTCTCTATACCCCGGAAACCCTGGACATTTTTCCTCCCTCCTTATAGTTTTCTCTTCGGCTTTCATTCAGTCGCAATCTGAACAACTGGTTTACGCACTGCTGCTTATTTTGGATTGGTCTGACACACGAGGGGCCGTGGATGAGCTGCTTTAGCCAAAACCGGAGATGGAAGTGCTGATAATATGTATTTCCTTTTGGATATTGCAATGCAATTCAGTGGCAAGCGCGGACTCTATCATTCACATCGGTGCCATATTCGAGGAGAACGCAGTGAGGGATGACGAGGTTTTCCAGCTGGCGATCTCAGACCTCAGTCTCAACGACGACATTTTGCAGAGCGAGAAAATCACACATTCCATAAAACTTGTCGAGGTTAACAACCCTTTCCAGGCGGTCCAGGAAGCCTGCGAGTTGATGACCCAGGGCATCCTGGCTCTGGTCACCTCTACCGGCTGTGCCTCGGCCAGCGCCCTCCAATCCCTGACTGACGCAATGCACATCCCACACGTGTATGTCCAGCGCAGTGGCGAGGGCTCACCACGCACCACCTGCCAGCTCAACCCCAGCCCCGACGGCCAACGCTACACCCTGGCGGCGCGCCCGCCCGTCCGTCTCAACGACGTCATGCTCACCCTGGTCGGCGAGCTGCGCTGGCAGAAGTTCATCGTCTTCTATGACAACGAGTATGataTCCGCGGCCTACAGGGTTTCCTGGACCAGACGTCTCGGCAGGGGCTGGACGTATCTCTACAGAGAGTGGACAGGAACATCAGTAAGGTCTTCTCGAACCTCTTCAACACCATGAGGACAGAGGAGCTCAACCGCTACAGGGACACACTGAGACGGGCCATCCTACTGCTCAGCCCCCGAGGAGCTCAGGTCTTCATCCAACAGGCTGTTGAAACCAACCTGGCTTCAAAGGACAGTCACTGGGTATTTGTCAATGAGGAGATCAGTGACACTGAGATCATGGAGCTGGCCCACAGTGCATTGGGGCGGATGACAGTGATTCGTCAGATCTTCCCGCTGTGGAGGGACAGCAGCGTGCGCTGCATGAGGAACAACCACCGCATCTCCTCCTTACTCTGTGACCCCCAGGAAGGATACTTACAGTCACTTGAGGTGTCCAACTTGTACCTGTATGATAGTGTGCTGGCACTGGCTAACGCCTTCCAGAGGAAGTTGGTGGACAGGAAGTGGCACAGCATGGCCAGTCTGAACTGCATCAAGAAGTCCACCAAGCCTTGGAATGGAGGCTGGTCCATGCTGGAGAACATCCAGATGGGACATATCACAGGCCTTACAGGAACGATGGATTTCAAAGCGAACGGATCCAATTCCCACGTCCAGTTTGAAATACTGGGCACCAGCTTCAGTGAGACGTTTGGAAAAGACGTGAAAAGGctgGCTACATGGGACTCAGTCCATGGTCTAAATGGAAGCCTGAAAGAGAGTCGCATTGAGAACGGCATGCAAGGAGTGATGGTCAAAGTAGTAACACTACTGGAGGATCCATTTGTCATGGTTGCTGAAAACATCCTTGGTCAGCCTAAGCGGTACAAAGGATTCTCCATCGATGTGCTCGACGCCTTGGCCAAGATCCTGGGCTTCAAGTACGAGATCTACCAGGTGGCGGACAGCAAGTACGGCTCGCAGCTGCCCAACGGCTCCTGGAATGGAATGATCGGCGAGCTCATAAACAAGAGAGCTGACCTGGCCGTGTCAGCCATTACTATCACTCCGGAGCGGGAAAGCGTGGTGGACTTCAGTAAGCGCTACATGGACTACTCTGTGGGGATCCTGCTGAAGAAACCGGAGGAGAAGATCAACATCTTCTCGCTGTTCGCTCCGTTTGACCTGGCCGTGTGGGGGTGTATCGCTGCAGCCATCCCCGTGGTTGGAGTTCTCATCTTCCTGCTGAGCAGGATGCAGTCACTGAGGACCCAAAATCCTCCAGTGCCACACCAGCAGCCCGCCAACCAGGCGTCCAACTCCCTGCACAGTGCTATCTGGATAGTCTATGGAGCGTTTGTACAGCAAGGAGGGGACAGCGTGGTGAGCTCTGTGGCCCTGAGGATCGTCATGGGCAGCTGGTGGCTCTTCACCCTCATCGTATGTTCCTCCTACACGGCCAACCTGGCAGCCTACCTCACCGTCTCCCGCATGGACACCACCGTACGGACATTCCAGGACCTGTCCAGGCAGATGGACGTGTCCTACGGCACCGTGAGAGACTCAGCCGTCTACGACTACTTCAAGAACAAGGGCACCAACCCTCTGGAGCAGGACAGCACATTCGCAGAGCTGTGGAGGACCATCAGTAAGAACAACGGCCATGATTACTCTGTGTCCAGTCCCTCAGAGGGCATCCGCAAGGCGAAGAAGGGCCCGTATGCCTTCCTGTGGGACATGGCTGTGGTGGAGTATGCCGCGCTGACGGACGATGACTGCACCATCACCGTCACAGGAAACAGCATGAGCAGCAAAGGCTACGGCATCGCCATGCAGCATGGGAGTCCCTACAGAGACCTCTTCTCCCAGAAGATCCTGGAGCTGCAGGAGAAAGGAGACCTGGACATCCTGAAGCAGAAGTGGTGGCCTCGTATGGGCCGCTGCGACCTCAACAGCCATTCCAACGCCACGCCCGATGGGCGGTCCCTGAAACTACACAGCTTCGCAGGGGTTTTCTGCGTCCTGGCTGCAGGACTGCTGCTGGCCTGCCTGGTTGCTGGCCTGGAGATGTGGTGGAACAGCAACCGCTGCGGGCAAGAGCAGCCCAAAGAGGTTACTAAGGATTACAGACTGGCAAGGGTTTCTGGTCCATTGACATATAATGAGATTACCACTGCTTCATCGGAAGGGAGGAAGGACatttggacagagagagaaagagactgggaTGAAGCAGAAGCTATTGACACAGGACAAGGAGGTGAATCTGGAACAGGTGCATCAGCGTATGAACAATCTTATGGACGAGGACAGGGCGCACAAGCAGATCCCCGGCCCGTCTATCGAGATCTCTGCGCTGGACATCGGCAGCATGCAGCCCAGCCAGCAGCTGGAGTCTGTGCGGGACTACCCGGGCACGGGCCTGTCTGTGAGCGCTTATCTCCCAGGGGAGGGTCATGGGGGGGGCCTGGGTCGGACACTAGCTCAGGGCCCTGGCAGCACCCTCCCCCACCACCCCCTCAGCAGCTCCACCATCCCCTCCATTCAGTGCAAACACAGAGCTCCCAACGGGGGGCTGTTCCGACAGAGTCCCGCCAAGACGCCCATGCCAATGTCATATCAGGGAGTTCCCGGAGGACCCATCCCAGAAGCCATTGAGTCCACCCACAGTACATCCATCTAATGGTGCCATCTCAATGTCACATGTCCTTCCCCTCACCTGATATTCTGGGGGGATTGTTGAAAaatatatgaagaaaaaaaatatgaaagTCTACAAACGAGAAAAATAAGAGATTTTTATTACCTGTTGAACAACCAACGTCGTCGAAAGAACAGAAAGTTTTACTTGTATATATTTGTAAATACTGAGAGAACGAAGTGAAGTAAAAGTGTATTTTGAATATTCTCAATTTTTGAAGTTgagttacaaataaaaaaaacaagataaaaaaaatgatattaAAAAAAACGACTGTTTGAATGGCTTTGTAAATTTTGTTCTATATGAATAATGACGCAAATTCATTGTGATTGTTTTCTAAGTGCCGAAATAAAagatgtctcttcacagttcatTCTTAGATGGCCATGCACCATAGAGACAAAATGTAGAACACCAACTGTTATGTACCACTGTAACAACAACCATATCTATAGAGCAGTATCAGAGGAGAATATTCCCAACAGAGGGATTCATTTTGTTTGTAAGGCATATACATTTTTCAAGGTGTTTTTGTTTTCCTACTTTAAAGTCTTAGAGAATCATTGATAAAGACTGAAACTGAAGTAATTGTCTCTTATGAGTTCTACATATTTTTGAAATGGAAGGTATTTCATAGAGCTCAATTTCAGCCCTACGTTGTCAAAGACATAGGGAGATTTAGTGTCAGTCAGCTCCCAACACCAAACAAAGCTGGTACTAAGGGTGCCGTGTACAGCGTAACATCAGTCAAACGTCTCACATTGCTAAGGCCAGACCTTAGAGTTAGGCTTACGTTAGGAGAATGTTCAAAGGAAATGTCTTGACTGAATCATGTCCCTGACGATGTATACCATATGTTTCCTTAGTTGTGTGGGAGGGATTTTTAAAACAGAAAAATGTTATttttaacaacaaaaaaagctCATTCGAAAAATCTGTGTTCATTTTTTACTGAAGGATTTATTGTTGAAAAGTTGTATACAGTTTGTCTCCTTTCAGAGTAGTTAAGTCATTTCAACTGCAGATGGAGAAAAGTAGATATATACTATTGTAATGTCTCATGTTTATAATTTGTAATGGAGTAATTATCACCAAGGTAGATGGAAGATAAAGGAGTGATATAAACATTCTAAACTATTACAGTGTAATAGCAGTACAGGTGACATATCCTACTGTCTAAATACTGATGGAACTCTGTTCATAAAATTAACAGAATTTTCCCATCGATTAACCTGTGCACTTTGCAGGGCAGCAGTTCATATTACATTTCCAACTAAGGATGAACTGCGAAACTTTACCAAGACTTTCGTAAGTGCAATTAAAATGCAATTATGTCCTGCAGTATATTTTCTGTTTACGTCCTTTAGCCTATCATACTGAAGAACCCATTGCCAGGAAGTGAGATAGTGAATGTCAGTGGTTACTGTTCATATGCACAACACATTGTGTACCAGGAATACTGATAGCTGATCTATACACATACCAATAAAAAGGTTTGTCCTCACCTCTTGGAAAATGTGACAAATCACCCCTCAGAGCCATTGAAGGAAAGCAAAGAACGAGAAAGAAGTGATGTCATGAGAATAAACCGAAATATCATCCCGCAAAAGTGTTTTGCGTCACCCGTGTTCCCGCTCTTGGTTTTCAAACAAAATTGGAGAGGTTGTAAGCCTGTATATGTTGTACAAGTAGATACTAATGTGAACCAAAGTGATCTCATTTTACACTGTGTTCTGCATACAACCTGTGCCAATGATCCGCTAATAGTGGTGAAAGGGAAGTTCCACACTACTGTAAGGATTGAGAGTGTTTCACTGCCTTACTTGTGTACCCCCGTTACTGTATCAATGCCCACGCCACAAGAttcaagaaaaaaatattttaaaaaaaaagctaTCATATCATCCAGTCTGTAACAGTACATCAACGGAGACTCATTTAATTTATGAATATGCTGCTTGGAGTTTCttaatctttaataaagaaatttggtttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1536909 lncRNA downstream 4741 14512259 ~ 14512578 (-) True G1344258
TU1536907 lncRNA downstream 6594 14510525 ~ 14510725 (-) True G1344256
TU1536904 lncRNA downstream 8620 14508453 ~ 14508699 (-) True G1344253
TU1536902 lncRNA downstream 9067 14507993 ~ 14508252 (-) True G1344251
TU1536898 lncRNA downstream 11640 14505377 ~ 14505679 (-) True G1344247
TU1537613 lncRNA upstream 60275 14968245 ~ 14968498 (-) True G1344929
TU1537616 lncRNA upstream 65342 14973312 ~ 14973540 (-) True G1344932
TU1537617 lncRNA upstream 67208 14975178 ~ 14975400 (-) True G1344933
TU1537632 lncRNA upstream 134162 15042132 ~ 15042678 (-) True G1344948
TU1537642 lncRNA upstream 145748 15053718 ~ 15054035 (-) True G1344958
XR_005036388.1 mRNA downstream 61602 14447197 ~ 14455717 (-) True LOC118939470
XM_036946255.1 mRNA downstream 300044 14213613 ~ 14217275 (-) True dnajc9
XM_021564843.2 mRNA downstream 301013 14213613 ~ 14216306 (-) False dnajc9
XM_021564831.2 mRNA downstream 339149 14168129 ~ 14178170 (-) False LOC110491408
XM_021564833.2 mRNA downstream 339149 14168129 ~ 14178170 (-) True LOC110491408
XM_036946263.1 mRNA upstream 87450 14995420 ~ 15041584 (-) True LOC110491419
XM_021564853.2 mRNA upstream 264158 15172128 ~ 15176318 (-) True c16h10orf88
XM_021564871.2 mRNA upstream 283856 15191826 ~ 15196912 (-) True LOC100136179
LOC110491429 mRNA upstream 293445 15201415 ~ 15215187 (-) True LOC110491429
XR_005036448.1 mRNA upstream 297575 15205545 ~ 15212257 (-) False LOC110491427
TU1536004 other downstream 883141 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 896579 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 1265651 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 1817151 12698986 ~ 12700168 (-) False G1342941
TU1537992 other upstream 343407 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 791015 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 2016552 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 2016552 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 2016552 16924522 ~ 16929432 (-) False G1347067

Expression Profile