RNA id: XR_005036452.1


Basic Information

Item Value
RNA id XR_005036452.1
length 2561
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC110491427
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15205545 ~ 15212257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACCCGCTCCCCTCCCTGAGGCACACGGCTATGGAACAGCTATTGGGAATTGTCACCTCGGGACAGGAGGGCTTTGACCGGGCCTTCCTATTGGAGGCCCTGTTGGAGCGCATGAAGGAGGGCGGCCCCGAGGTGGTGGCTGCAACTTTGAAGGCTCTGGAGCTCTTTCTTGATCCAGAGGACACTGTTTCATGTCTACTCACTGCTGCCATGCGTAGATCTCTCAAAGGCTGAAAACTGGTGTCCACAGTCGGAGGCAGTGAGGGTTCTGGAGGAACCCAGGCTGGTTGAGGGGATCTCTGACCTGAGGGCCCGTGTCGTCGGGATCTATTGCCCTTCCTTGTGGTCACCTCGGCCATGCCGGACTCCCCAGACCTCCAGATGGCCTCTTGTGTGGCCCAGTCTCCACCCTCTTATACCACCGCACTCAGGGCTCAGGGCTGGGCCCATGCACTCAAGGACGTGATGGAGAGGATTTCTCAGCCAACCAGCATCTCAACACTGACCAAGAACCTGTCTAACATGGACCCCTTCTCCAAACAAAATGCTATGAGTGATTAGTAAAAATTTGTTGGCGTATCCAAAGTACCATTTGAAACAAACCTGCCTTGCTTTCCTGAAACTGATATGATAATTTTTGGATCTCTCCGCGACCTAGCTCAGCTGGTTGAAGCTGGCTGGTGTGGTAGCGGTCCAGCGGGGCAGCCTGCGGGAGAGGGCAGGGTTCATGGTGCCGAGCCAGACCTTACTGCAGGGCCTGGGGGACGTGAGTGAGACCCAGCACCTCCACACCGCCCAGTGTGTCTACTCCCTGCTGGAGCCTTCAATGCTGGAACTTAGCCAGAAAGACATGCCTCAGCAGGAGGATATTCATGGAAGAGTACCTGTAGAgggcagggcagacagacagcgTATGGGGTGCTGCTGGTGTCACTGCTTAGAGGACTCTTATCCAGTCTCAAGTGCCACGACGCTTCCTTCAAAAATGTTCCTTTTTCGAAAGCAATTGGCTGCATATTGTTTTTCATCATGTTCAAGTAAAGGCCTGGATATCACCAGTTACTTTAGCCACTTGGTCACACACTGAGTAAGAAGGAAGGAGGCTGACAGACGGCTTGCTTCCTGTCTGGATTTCCTGTCAAGTGAGACATGGTCGAACCCAGAGAAGCTGGACACCAACACGTGCTGCTACCGCCGACTGCTGTGTCGTGTGTTTGATGTCATCGTCGCTGGGGCACGCCAGGGGCCCATTGCAGCCAGCTTCAGGGCCCTGATGACGCTACTTTTTTAGGTACTGAAACTTGATATGTTACACAATGGATTTCAGTGCACAGACGGATGCTTCACTCAACTCATTGGCGCATAGCATCACTCGAAGGATAGTCCATCGTTCCTCTAGGCCATGAGGAAGTTCTGTGAAGAGGCTGTAACAGGGACAGGCAAGGCCCGGGACAAGACCTGTTAGTGGGGTTGGAGGAGCTGCCGCTCAGTGGTCAGGTGGCCAGCTGCCCTGCCTACACTTCCAAAACCATACAGAGGGCTCTGGGAGAGCCGGAGCCTGCTGGAGCAGAGCGGGCCGGGGGAAACCCACCATTCTAAAGGACAAAGGCCCTGCTCATGCAGCTGGTCCTGGGGAAGTACAATGAACAGGCAGCCCCCCCACCTGATTAAGGACCAGGCCTGCATGGAGCTCTTCATTGAGGCCCTGGGCACGGTGTCTAAACCCTACCCTGATATCCCCTGCTTCCAGATCATTGTCTTATTACAGGAAGGCCAGGACACTTCTCAGGCAGTGCCAGAAGAGGGCGCTGTGTCCCGGGAGAGGGTAACACTCATCCTAGAGCTGCTGCAGCACAAAAAGAAGTTGCAGAGGCCTCAGATGCTAGTTCCCGCTCTTCAGCCTCCTCTCGTAGGTGCCTGGAGACGTCAACCGTGGAGCAAGACAACCTAGAGTACGCCCAAGCATGTAGGCCATGTCTGTTCAACGTCTACCAGAAGCTCTCCCCCGACGGAGGACCCATCAGCAAAGGCTGATGCCGGCAGTGCTGCAGACTCTAGACATCACCTCTTTCCTCTCTGCTAATGAGATCTACATGCTGAGTGCCGTCACTGAGACCCTGCCTCACTTCATCACCTGGGACAATAGGACACTGCTACAGAGTAATGTGACTTGACTGAGGCGGGTGGCAGAGAAGGCCgccaccaccaccccacagctGGCCGTGTGACTGGCCTCCCTCAGGACCACCGTGGCCACCAAGGTTCCCTCCCAGGATCCTGCTGTCAACCCTCGAAAAAGTACTAGAATAAGATGGACTCCAAACAGCCAGCTTGATCCCCTGATGGGCATCTTGAAAGAGCACATTGGTCACATGGAGAAGGATCAGCTGACTTCCCACCAATCAGAGCTCACGTACTTCCTGATTTCTTTGGACTTCCGGGCCCAGCACTGCCAGGGTGATCTGGAGAAGACTAAGGAGATGGAGCGCGATCTGATTGACTGTCTCCTGGCCTCTGCTGGTTCTTAATAACAAATGTGAAGGATAAACGCAAGGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1537955 lncRNA downstream 26584 15095317 ~ 15178961 (-) True G1345228
TU1537971 lncRNA downstream 39385 15165530 ~ 15166160 (-) True G1345241
TU1537972 lncRNA downstream 72504 15131961 ~ 15133041 (-) True G1345242
TU1537954 lncRNA downstream 104774 15095317 ~ 15100771 (-) False G1345228
TU1537959 lncRNA downstream 106172 15097764 ~ 15099373 (-) False G1345230
TU1538019 lncRNA upstream 13020 15225277 ~ 15225503 (-) True G1345284
TU1538020 lncRNA upstream 20819 15233076 ~ 15233811 (-) False G1345285
TU1538021 lncRNA upstream 20819 15233076 ~ 15233591 (-) True G1345285
TU1538023 lncRNA upstream 22028 15234285 ~ 15236122 (-) True G1345287
TU1538042 lncRNA upstream 44445 15256702 ~ 15308630 (-) True G1345304
XM_021564871.2 mRNA downstream 8633 15191826 ~ 15196912 (-) True LOC100136179
XM_021564853.2 mRNA downstream 29227 15172128 ~ 15176318 (-) True c16h10orf88
XM_036946263.1 mRNA downstream 163961 14995420 ~ 15041584 (-) True LOC110491419
XM_036946259.1 mRNA downstream 297575 14517319 ~ 14907970 (-) False grid1b
XM_036945851.1 mRNA upstream 43142 15255399 ~ 15258106 (-) False vps35l
XM_036945850.1 mRNA upstream 43142 15255399 ~ 15258527 (-) True vps35l
XM_021564874.2 mRNA upstream 62549 15274806 ~ 15292329 (-) False LOC110491431
XM_021564875.2 mRNA upstream 62549 15274806 ~ 15292329 (-) True LOC110491431
XM_021564884.2 mRNA upstream 109869 15322126 ~ 15350844 (-) True LOC110491434
TU1536004 other downstream 1571367 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 1584805 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 1953877 13251434 ~ 13251668 (-) True G1343278
TU1535450 other downstream 2505377 12698986 ~ 12700168 (-) False G1342941
TU1537992 other upstream 39120 15251377 ~ 15253570 (-) True G1345259
TU1538336 other upstream 486728 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 1712265 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 1712265 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 1712265 16924522 ~ 16929432 (-) False G1347067

Expression Profile