RNA id: XM_021564886.2


Basic Information

Item Value
RNA id XM_021564886.2
length 1956
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110491436
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15368988 ~ 15372455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAATGCTCAAGGCGTTTCTTCTTCCAGATGTGTCTGAGTTTGCTGGTGTCCACGGGGTCCTGTAGATGCAAGTCACTGAACGATGTCCTCCAAAGTGAAGATCCTGAGGGCTTCACTGAGACTTCCAAGCAGGACTTTGTTGAAAAGGAGGAAATGGACAGCAGGTTACAGAGCTTTCTGGAAAACATGAAGGAAGGGTTTCTGAGAGAACTCAACTTATCAGATGTCCCACAAGAGCACAGCAAGATATACCCACCGCCGTTCATGATTGAACTGTACAACAAGTATGCCTCCGACAAGTCCGCGATGCCTCGTTCTGATGTCATTCGCAGCTTCGCCGTTCAAGATGTTAGTCACTCTACAAAAAATGGAACAAAGTCAAAACACAGACTGCTGTTCAATGTAACTGTCCCAAATCACGAAGAGGTCACCATGGCGGAACTCAGGCTATTCACCCTGCTGGATAATAGGGCGACCTCGCACTCAACCTCCTCCAATCAGATCGGGGCTTCCATAAAGGTCTATGAAGTGCAGTATAAAGGAAACAATGTCACAGCCCACTTTGTGAATGGGAAAGAGGTCGTTGGGGCCCATCACTCTTGGGAAGCTTTCGATGTGACCACCGCCATCCAGAGTTGGGTCAAATCAGGCCGTGGGGCCAGTGCATTTGAGGTGGTGGTCGACAGGTGGGACTGTGGGCCTTTCAAAGGCGGAGGTTTTGACGTGAGCGTGGGTGCGGGGGATAACCAGTCAGCTGCTTTGATTGTCTTCTCTGATGACCTGgggagcaggaagagagaggccAAGAAGGAGCTGAAGGAGGAGATAGTCCATGAGGAAGAGACGGTCTTCTCAGGGAGCGACTGGCAAGGGCCCGACTTCAATGAGATCCCCGTGGACCTACACCCCAGGCGGAAGAGGCAGGGGGACACCAGCTACTGCCGACGGACCTCCATGCGCGTCAAATTCAAAGATATCGGCTGGGACCAGTGGATCGTGGCGCCCCCTGAGTATGACGCCTTTGAGTGTAGAGGGGTGTGTTACTACCCCCTGACTGAGGACATGACCCCTTCCAAACACGCCCTCATCCAAACCCTGGTCAATCTCAAGAACCCCAAAAAAGCCAACATGGCATGTTGCGTTCCCACAAAACTGGCCCCAATCCCGGTCATGTACCAGGAGAATGGTGTCATCACCTTGCGACAGATGTATGAGGAGATGAAGGTGGCAGAGTGTGGATGTAGGTAGTAAGAGGTAACATCCATGGTGGTTCCCTTTATCCTTTACTGTAAATCTGTACATTCCTGTTGTAAGATGCTTTTGACTTATTTTATTTAGTATACgctcagaaaatatatcaataaaacCTGAAATTCAGTATTTATTAACTATGTATCATTATTGTAATGGTTTtagaaaacaaaagagatgataaATTGAATCTATTATGAAGTCAGTGTTCATCAATTGTTTGATATCTATAAAGAAATTATCATAATCGAAAAGAGTAGATTTTGAAAGTATTTTTTATAACAGGGCATTTCTGTAGTGTacgcaagaggcgtcactacagtgcctggttcgaatccaggctgtatcacatccgccCGTGAtggggagtcccacagggcgtgcacaattgtcccagcatcgtccgagtttggccgggataggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaatgaaaatgaTGATTATGACTTCTAAATTATTCATTTGAATTAAACATGTAGTGTTCTCATTAGTTTCATATTAGAGGCAGAAACTTCTCTATAGCATAGCAGTGTATTTCTCCGCTAAATATGTTCTACTGTATAAATTAATATTCATTTTGAATTTCTAAAGTTCAACTTTTGGGGATGAATTTCTTCTTTGAATAATGTGTACAGAGTGCCCTCTAAT

Function

GO: NA

KEGG:

id description
K05503 GDF2, BMP9; growth differentiation factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1538042 lncRNA downstream 60358 15256702 ~ 15308630 (-) True G1345304
TU1538023 lncRNA downstream 132866 15234285 ~ 15236122 (-) True G1345287
TU1538020 lncRNA downstream 135177 15233076 ~ 15233811 (-) False G1345285
TU1538021 lncRNA downstream 135397 15233076 ~ 15233591 (-) True G1345285
TU1538019 lncRNA downstream 143485 15225277 ~ 15225503 (-) True G1345284
TU1538109 lncRNA upstream 10802 15383257 ~ 15383714 (-) True G1345357
TU1538110 lncRNA upstream 18895 15391350 ~ 15393469 (-) True G1345358
TU1538111 lncRNA upstream 35308 15407763 ~ 15408045 (-) True G1345359
TU1538112 lncRNA upstream 35912 15408367 ~ 15408587 (-) True G1345360
TU1538115 lncRNA upstream 38474 15410929 ~ 15411274 (-) True G1345363
XM_021564885.2 mRNA downstream 2458 15358308 ~ 15366530 (-) True LOC110491435
XM_021564884.2 mRNA downstream 18144 15322126 ~ 15350844 (-) True LOC110491434
XM_021564874.2 mRNA downstream 76659 15274806 ~ 15292329 (-) False LOC110491431
XM_021564875.2 mRNA downstream 76659 15274806 ~ 15292329 (-) True LOC110491431
XM_036945850.1 mRNA downstream 110461 15255399 ~ 15258527 (-) True vps35l
XM_021564888.2 mRNA upstream 821 15373276 ~ 15379477 (-) True LOC110491438
XM_036945874.1 mRNA upstream 66289 15438744 ~ 15456421 (-) False LOC110492840
XM_021564894.2 mRNA upstream 111924 15484379 ~ 15508569 (-) False LOC110491439
XM_021564890.2 mRNA upstream 111924 15484379 ~ 15519280 (-) False LOC110491439
XM_021564895.2 mRNA upstream 114708 15487163 ~ 15519287 (-) False LOC110491439
TU1537992 other downstream 115418 15251377 ~ 15253570 (-) True G1345259
TU1536004 other downstream 1734810 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 1748248 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 2117320 13251434 ~ 13251668 (-) True G1343278
TU1535453 other downstream 2668820 12698986 ~ 12700168 (-) True G1342941
TU1538336 other upstream 326530 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 1552067 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 1552067 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 1552067 16924522 ~ 16929432 (-) False G1347067
TU1540000 other upstream 1552067 16924522 ~ 16929432 (-) True G1347067

Expression Profile