RNA id: XM_021564895.2


Basic Information

Item Value
RNA id XM_021564895.2
length 1390
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110491439
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15484379 ~ 15519287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagtgaggcagagagagataatatacaGAGCTCTAGAGATGATAGAGGCAGAGACTCGAGAAAGAAAAGGAAGAAcacagagggagaagaagagagaaagtgagaaaatgACAGAACATCTGTGAAAAACAGGGAAGCACACAGCTGTAGCCGATTAATATGGTAGctgccagccagagagagaggaagagtgagaggacGAGAGATGGAAGACAGCAGCTCTACTCCTTGTGTGTTTCAGCCTCAGTGAAGCCTGCGCTTGGAAGGACATTCTGATCACACACAGGCATTTACCTGTCAGTGTGGTGTAGTAAGAGTGGGATGagatcccccctccctccctccaccctccctaccGCCGTGGTCACCCTGGCGATGAATAATGCAGTAGGGATGGGTGGAGGCCACTGAGCGTGTGCGAGGAGGAGGGATCCCTCCCCCTCAGCCTCAGCCCCCTagcctgctgttgctgctgctgctgttgcctaCTGCAGAACGtcagtggtagagaggagagaagagaggagaggcaggacagaggagaggatggtgtgttgagagagagtgatagagagcaAGAGCAAGAGGGGTGGGGTgccggacggacggacggacggatgaACATGCCCAGTGTGGTATTCCTGCGATGACAGCCATGCTGAGTCCCAAGATTAGACAGaccaggagagCCCGGTCCAAGAGCATGGTGATGGGAGATGTGTCCCGGGGCCCAATCCGCCCGTCCTCCCCCAGTCTCCAGGAGGGGGCTCTGAAAGCTGGCTGGCTGAAGAAACAGAGGAGCATCATGAAGAACTGGCAGCTGAGATGGTTTGTCCTGCGCTCCGACCAGCTTTTCTTctacaaagaggaggaggagaccaagCCACAGGGCTGCATACCCCTGCAGGGCTGTCAGGTGAATGAGCTCACCGCCAACTCAGAAGAACCAGGGAGGCATCTTTTTGAAATCGTTCCAGgTGGTCCAGGAGGAGAAAAGGACCGTGCTGCGCTCAGTCATGAGGCCTTTCTGCTCATGGCCAACTCTCAGAGTGACATGGACGACTGGGTCAAGGCCATAAGACGGGTCATCTGGGCACCCTTTGGAGGAGGGATATTTGGCCAGCATTTAGAAGACACAGTCCAGTATGAGAAGAAATTTGGGCACCGCCTGGCACCTCTTCTGGTGGAGCAGTGTGTGGACTTCATAAAGGAACGAGGTCTGGATGAGGAGGGCCTCTTTCGGATGCCAGGGCAGGCTAACCTGTAACACTGACGTCCACACGGTGGCATCCCTGCTGAAGCTCTACCTCCGTGAACTGCCTGAGCCTGTGGTCCCTTTCTCCAAGTATGAGGACTTCCTCTCCTGTGCTCAGCTGCTGGCCAAAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1538131 lncRNA downstream 3694 15483242 ~ 15483469 (-) True G1345374
TU1538128 lncRNA downstream 4511 15481975 ~ 15482652 (-) True G1345371
TU1538158 lncRNA downstream 9203 15476244 ~ 15477960 (-) True G1345401
TU1538156 lncRNA downstream 14291 15471860 ~ 15472872 (-) True G1345399
TU1538121 lncRNA downstream 24990 15435835 ~ 15462173 (-) True LOC110492840
TU1538169 lncRNA upstream 520 15519807 ~ 15520055 (-) True G1345412
TU1538243 lncRNA upstream 40842 15560129 ~ 15566321 (-) True G1345475
TU1538318 lncRNA upstream 138459 15657746 ~ 15661550 (-) True G1345543
TU1538319 lncRNA upstream 140447 15659734 ~ 15661130 (-) True G1345544
TU1538322 lncRNA upstream 147498 15666785 ~ 15667077 (-) True G1345547
XM_036945874.1 mRNA downstream 30742 15438744 ~ 15456421 (-) False LOC110492840
XM_021564888.2 mRNA downstream 107686 15373276 ~ 15379477 (-) True LOC110491438
XM_021564886.2 mRNA downstream 114708 15368988 ~ 15372455 (-) True LOC110491436
XM_021564885.2 mRNA downstream 120633 15358308 ~ 15366530 (-) True LOC110491435
XM_021564884.2 mRNA downstream 136319 15322126 ~ 15350844 (-) True LOC110491434
XM_021564900.2 mRNA upstream 3964 15523251 ~ 15525411 (-) True LOC110491441
XM_021564903.2 mRNA upstream 16721 15536008 ~ 15550905 (-) True LOC110491442
XM_021564905.2 mRNA upstream 77227 15596514 ~ 15599354 (-) True LOC110491444
XM_036946293.1 mRNA upstream 524957 16044244 ~ 16180403 (-) False LOC110491446
XM_021564906.2 mRNA upstream 524957 16044244 ~ 16180566 (-) False LOC110491446
TU1537992 other downstream 233593 15251377 ~ 15253570 (-) True G1345259
TU1536004 other downstream 1852985 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 1866423 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 2235495 13251434 ~ 13251668 (-) True G1343278
TU1535453 other downstream 2786995 12698986 ~ 12700168 (-) True G1342941
TU1538336 other upstream 179698 15698985 ~ 15699263 (-) True G1345561
TU1539993 other upstream 1405235 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 1405235 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 1405235 16924522 ~ 16929432 (-) False G1347067
TU1540000 other upstream 1405235 16924522 ~ 16929432 (-) True G1347067

Expression Profile