RNA id: XM_021564924.2


Basic Information

Item Value
RNA id XM_021564924.2
length 1391
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110491457
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16728503 ~ 16733104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGAGGGAGCTGCGCGTCTTTAGAAATGTCACTTTCTCCGGTTCAACTTTGAAACGTCATCTCTCTGCGACTTGTTGCTGCAACCAGAGCAAATATGGCGCCTTCTCCAGTGAGGAGGAAGGAGCATATGGATGACAAGGCAAAAGTGCGAGAGAAGGAGAAAACGGGTGCCACCAAGGAGAAAGCTGAGAAGGACAGGGGAAGGGAGAAGGGACGCAAGCGACGTAGCTCCACTGGGAGCAGCAGGTCCAGCTCCAGTAGCAGCTCTGGCTCCAGCTCCGGTTCTTCCAGCGGCTCCAGTTCCTCCTCTGCCTCAAGCCGCTCCGGGTCTTCCAGCTCCCGATCTTCTAGCTCAACCAGCTCCGGGTCGCCCAGCCCCAGTCGCCGCCGCCACGACAACCACCGCCGCTCACGGTCCAAATCCAAGTCATCAGTGAAAAAGGATGACAAGGAGAGGCGTAAGAGGAGCCCCAGCCCCCGACCAACCAAGGTGTACCTGGGCCGCCTCACCAGAAACGTTGTCAAGGAACACATCCAGGAGATCTTCAGCTCCTATGGCAAAATCAAGATGATTGACATGCCTGTGGACAGGCTCCGCTCACACTTGTCAAAGGGCTACGCCTACGTGGAGTTTGAGAATGCCGATGAGGCCGAGAAGGCTCTTAAACACATGGATGGAGGCCAGATTGACGGACAGGAGATCACAGCCACTGCCGTGCTGGCTCCTAGGGTAATATGCCCGCCCCCTCGCAGGCCCTCCCCCCCTCGCAGGATGCCCCCACCACCCCCGATGTGGCGACGCACCCCTCCACGCCTGAGGAGAAGGTCTCGGTCACCACGGAGACGCTCTCCGGTTCGCCGCAGGACTCGTTCGCGCTCACCCGGTCGCAGACGCCACCGCTCACGCTCCAGCTCCAATTCCTCCCGGTAGAGCTGCCTGAAACCTCTCACCTCACagctactctcctccctcctatccTTCTCCCACCTTCCCGTTCTCCACTGTAAAAGTATGGCTGTATCCAAAGTTCTACTTAGCTTCCTTTCCTAGTCCTTCCCTCCATGTTCACTGATCTCAGAGGACATTACAGGTGAAAGCATGACAGCCTTTCTCTTGTCATAGTGTATTGTTATTGGTCTATAAGCATCATGTTGAATGCTAGGCTCAATCTGAGGCAAGAGGAGTGAAGTGAGCCCTGCTCTCAAGCCAGGTTTTTTTTTGTCCTCAACAGCTGAGTTGTGGCTGACACATTGTGATTACAGAATTCTCTTTTTTTGTTTGCACATAGATTTGTGTGTTTAGTTTTAATATGCAACTGTTACAACTCTTTAGTTGAGCCAGCTTGACATGTGCTGCCTGATGTTTTAATAAAGTTGACTTGTTTTCA

Function

GO: NA

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1539885 lncRNA downstream 33402 16693984 ~ 16695101 (-) True G1346971
TU1539811 lncRNA downstream 148017 16579183 ~ 16580486 (-) True G1346904
TU1539804 lncRNA downstream 169024 16557797 ~ 16559479 (-) True G1346897
TU1539318 lncRNA downstream 256125 16472130 ~ 16472378 (-) True G1346487
TU1539310 lncRNA downstream 264419 16463812 ~ 16464084 (-) True G1346479
TU1540043 lncRNA upstream 155398 16888502 ~ 16895370 (-) False G1347109
TU1540053 lncRNA upstream 155398 16888502 ~ 16895370 (-) False G1347109
TU1540054 lncRNA upstream 155398 16888502 ~ 16895370 (-) False G1347109
TU1540055 lncRNA upstream 155398 16888502 ~ 16895370 (-) False G1347109
TU1540057 lncRNA upstream 155398 16888502 ~ 16895370 (-) False G1347109
XM_021564926.2 mRNA downstream 3524 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 3524 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 46939 16653966 ~ 16681564 (-) True lmf1
XM_021564921.2 mRNA downstream 92951 16499126 ~ 16635552 (-) True LOC110491454
LOC118939491 mRNA downstream 231162 16495588 ~ 16497341 (-) True LOC118939491
XM_036946348.1 mRNA upstream 425210 17158314 ~ 17173932 (-) False LOC110491465
XM_036946345.1 mRNA upstream 425210 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA upstream 425210 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA upstream 425210 17158314 ~ 17173934 (-) False LOC110491465
XM_036946352.1 mRNA upstream 572954 17306058 ~ 17352385 (-) False LOC110491470
TU1538336 other downstream 1029240 15698985 ~ 15699263 (-) True G1345561
TU1537992 other downstream 1474933 15251377 ~ 15253570 (-) True G1345259
TU1536004 other downstream 3094325 13618009 ~ 13634178 (-) True G1343452
TU1536006 other downstream 3107763 13585136 ~ 13620740 (-) False G1343452
TU1535820 other downstream 3476835 13251434 ~ 13251668 (-) True G1343278
TU1539993 other upstream 191418 16924522 ~ 16929432 (-) False G1347067
TU1539994 other upstream 191418 16924522 ~ 16929432 (-) False G1347067
TU1539999 other upstream 191418 16924522 ~ 16929432 (-) False G1347067
TU1540000 other upstream 191418 16924522 ~ 16929432 (-) True G1347067
TU1540318 other upstream 462226 17195330 ~ 17196129 (-) True G1347343

Expression Profile