RNA id: XM_036946347.1


Basic Information

Item Value
RNA id XM_036946347.1
length 3671
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110491465
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17158314 ~ 17212112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGGCCGGCTTCGACTCTGCCATTGGTTGAGGGCAGTTCTTGTTTTTACTGTCTGGAATGTTGGACAGTAGCCCATTTCAAAGGAGATGGGCTTGATAGACGTGGCTGGATAACAGACACAAACAGGACTTGGATGCTAAGCAGGTATCACCctgtTGTAGCGGCTGAAAGTTCGGGTCAGTTGACCATGCTGTTACAGAGGCTGTCTCTTCGTGCCGGGCTCCCTCCGAGCCCCAGGACTCAACGCACCACCATCTTCCCTCGTCTAGCCAAAGCACTGACACAAGTGGGTCTGGCGCGTGCCAAAAGTAACTCCTTCACCCACCGCGGGGAGCTCCGCAAGGCCAAGAGGATTGTGGTCAAGCTGGGCAGCGCCGTAGTCACCCGGGGTGATGAGTGCGGCCTGGCGCTGGGCAGGCTGGCCTCGGTAGTAGAGCAGgtGGCCATGCTAcagaaccaggggagagagatgatgatCGTCACCAGTGGAGCGGTGGCCTTCGGGAAGCAGAGACTGAGGCACGAGATCCTGCTGTCCCAGAGTGTCAGACAGGCCCTGCACTCTGGACAGAACCAGATCAAAGACATGTCAGTACCAGTTTTCGAGGCGCGGGCCTGTGCGGCAGCCGGACAGAGTGGTCTGATGGCCCTGTATGAGGCCATGTTCACCCAGTACAGCACATGCACTGCACAGGTCCTGGTCACCAACCTGGACTTCCATGACGACCAGAAGCGGTGGAACCTGAACAGCACGCTGCAGGAGCTGCTTCGCATGAACATCGTACCCATTATCAACACCAACGATGCCGTGGTGCCCCCGCCCGAGCCCAACAGCGACCTCCAGGGGGTCATCAGTATAAAGGACAATGACAGCCTGGCGGCACGCCTGGCCGTGGAGATGAAGGCAGACCTCCTCATTGCTCTCTCTGACGTAGAAGGTCTGTACGACAGCCCTCCTGGAACAGATGACGCCAAACTCATTGACATCTTCTACCCTGGTGACCAGCTGTCGATCACCTACGGCACAAAATCCAGGGTGGGGATAGGAGGCATGGAGGCCAAGGTAAAGGCGGCCCTGTGGGCCCTACAGGGGGGCACGTCGGTAGTCATTGCCAACGGCACCCACCCCAAGGTGACGGGCCACGTCATCACTGACATCGTGGAGGGCAAGAAAGTGGGCACCTTCTTCTCCGAGGTCAAACCTGCCGGCCCCACCGTGGAGCAGCAGACTGAGATGGCCCGGAACTCTGGCAGGACCCTGGCAGCCCTTCATCCAGAACAGAGAGGTGAGATCATCCGTCACCTGGCAAACCTGCTGGTTGAGAAGAAGGAGGAGATCCTTGCTGCTAACAAGATGGACATGGACATAGCAGTCAATGCAGGTCAGTTGTCGTCAGCCTTGCTGAACCGTCTGAGCCTGTCCCCGGCCAAGCTGAATAGCCTGGCTATAGGCCTGAGACAGATAGCCCTGGCCTCTCGGGACAGCGTGGGCAGAGTGCTGCGTAGGACCAGAGTAGCCCACAATTTAGAGCTAGAGCAGATCACTGTGCCCATAGGAGTACTGCTGGTCATCTTCGAGGCCCGCCCCGACTGCTTGCCACAGGTATCAGCTTTAGCCATAGCCAGCGGGAATGCTCTGCTGGCGAAGGGGGGCAAGGAAGCAGCCAACACCAACCGCATCTTACTTGAGCTGACCCAGGAAGCACTGGATATCCACTGGGTCAAAGAGGCTGTACAGCTGGTGAGTACCCGTGAGGAGGTGGAGGACCTGTGTAGACTAGATGAGATGATAGACCTGATCATCCCGCGAGGCTCATCCCAGCTGGTCAAGAACATTCAGAGCGCAGCCAAGGGCATCCCAGTTCTGGGCCACAGTGAAGGCATCTGCCACGTCTACATCGACTCGGAGGCCGCCATCGACAAGGCCATCAAGATCGTCAGAGACTCTAAATGTGACTATCCTGCGGCCTGCAATGCTATGGAAACACTGTTGGTTCACAGGGACATACTCAGGACTCCTCTGTTTGACCAGATCATAGACATGCTCCGCACCGAACAgGTGAAGATTCACGCTGGCCCCAGGTTTGCCTCCAACCTGACCTTCAGCCCATCAGAGGTCAAGTCTCTGAGGACAGAGTACGGGGATCTGGAGTGCTGCATCGAGGTGGTGGACAGTATGCAGGAAGCGATAGACCATATCCACAGATATGGCAGCTCCCACACCGACGTCATTGTGACTGAAAACGAGGACACAGCGGAGCGGTTCCTGCAGCAGCTGGACAGTGCTTGTGTGTTCTGGAACGTCAGTTCGCGATTCGCAGACGGATACCGCTTCGGACTGGGTGCTGAGGTGGGCATCAGCACAGCTCGTATCCATGCCCGGGGCCCCGTGGGCCTGGAGGGTCTCCTCACCACTAAGTGGGTCCTGAGAGGAGACGGCCACACTGCTGCAGACTTCTCTGAACAGGGCACCATGGAGTACCTCCACGAGAATTTGCCAGTCACACAGCCACAGCCCAGACAGATAGCTGCCCAGAGTGAGGAATGACAGAGGATCTCCAACTAGAGACACACCTAAACACACTTAACCACTTCATGAGAGAAAAGCTTTCCCCTGGTACCAAAGAAACAATCCCATTGTCATATTCATTCGATCTGGATCAGAGTTTCATTAATTCTACACCAGCTCTCAAAAGTTTTATTGCAGTGATTAGCTCACTCAGTATTCAGTGAATCAACTCATGATTGGTTACATTGACCCTGTTAGACTGTAGAAGGTCTCACACCATTGGTCTAGACATGAATTGGTCTAGATCTTATGCGCAGTAGTGATGAGTTTGGTAAATATGCTCTCCAGGACCCACACTTAAAGGGAATTTTTGCTTAAGCTAGTTTACATCTGTGTTATTATCTCTATCAAGAGGCTCCCCTCTTGGTTTTAGTTCCTATTGATTGGTCTGTTGTGCTGTGCTCTATCAGATGAGACCCTTACCCTCAAAGTATTGGTTCGGTGATATGAATGCACAACCAAACAGTGTTGATGCTAGGTTTAAAGCTCAACCTAAGTTAGGAAAGTTACTGGTGTGTCATTTAAATTGGGCTTGAATTGTAGGTCCTCAAGGCCACAAATTGTATGAATTGCTATTAACATTAATACTGCATCGTTTTGCAGTTCTACCAACACAATCCTTATTTATATGCAGTTAAATGACCAGTGATGAACCATTGGATAAACAATATTTAATAACCTTAAATGTGTTTTGTCATAGATATggatgaataaaacatttattgaCCCAATCTTATTCATAAGCATTCAAGTTAGATTTAATTCTATAAGAAAGCAcgtccttttttttttttcctctttTCCTCAAAACTTTTTATGTCCTTTTGAATGCAAATGCTTTATTCTCCTGCTTTTGCTTTTTTTTTCCCACACGGTCTATTTACGTCGACTTTACAGTGCCCAGAGCCTCTGTCAGATACAAGAGCTGCTTTCCGTCTCCTTCAGGGGACTACTGCCTTAAGATACAGCGCTGCTGTTACATTCCAGCTTATGAGCTTTATATCTGATGTCAAGTGACGCACACTACAGATCAGTTttggtttttttttgttgtaatttgTAGACCATATTGTAGAATAAAAGTTTTTGGTGAATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540226 lncRNA downstream 57594 17099498 ~ 17100720 (-) True G1347269
TU1540196 lncRNA downstream 91427 17065750 ~ 17066887 (-) True G1347244
TU1540134 lncRNA downstream 111814 16989972 ~ 17046500 (-) True G1347183
TU1540099 lncRNA downstream 208968 16949026 ~ 16949346 (-) True G1347148
TU1539998 lncRNA downstream 231901 16924522 ~ 16926413 (-) False G1347067
TU1540334 lncRNA upstream 12956 17186890 ~ 17194727 (-) True G1347357
TU1540320 lncRNA upstream 33211 17207145 ~ 17230708 (-) True G1347345
TU1540561 lncRNA upstream 114061 17287995 ~ 17293635 (-) True G1347556
TU1540613 lncRNA upstream 215165 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 215451 17389385 ~ 17391161 (-) False LOC110491477
XM_021564924.2 mRNA downstream 425210 16728503 ~ 16733104 (-) True LOC110491457
XM_021564925.2 mRNA downstream 425309 16728503 ~ 16733005 (-) False LOC110491457
XM_021564926.2 mRNA downstream 433335 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 433335 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 476750 16653966 ~ 16681564 (-) True lmf1
XM_036946352.1 mRNA upstream 132124 17306058 ~ 17352385 (-) False LOC110491470
XM_036946353.1 mRNA upstream 132663 17306597 ~ 17352385 (-) False LOC110491470
XM_036946354.1 mRNA upstream 132663 17306597 ~ 17352385 (-) False LOC110491470
XM_036946358.1 mRNA upstream 132663 17306597 ~ 17352385 (-) False LOC110491470
XM_036946356.1 mRNA upstream 132811 17306745 ~ 17352385 (-) False LOC110491470
TU1539993 other downstream 228882 16924522 ~ 16929432 (-) False G1347067
TU1539994 other downstream 228882 16924522 ~ 16929432 (-) False G1347067
TU1539999 other downstream 228882 16924522 ~ 16929432 (-) False G1347067
TU1540000 other downstream 228882 16924522 ~ 16929432 (-) True G1347067
TU1538336 other downstream 1459051 15698985 ~ 15699263 (-) True G1345561
TU1540318 other upstream 21396 17195330 ~ 17196129 (-) True G1347343
TU1540612 other upstream 215451 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1243681 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1460097 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 2146936 19320870 ~ 19325054 (-) True LOC110491541

Expression Profile