RNA id: TU1540316


Basic Information

Item Value
RNA id TU1540316
length 1410
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110491465
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17158314 ~ 17212112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAAATCATATCGTTTAATATGTTCAGGAAAACCCCACAGAAACAGTAGCGGGGAAAACGTACAGATTTCCAATCATTCTTAACAGACGTGTCAGCCTAACAGCCTATGACCAGATAGCCCCCTCCTGCCCTTACAGATCTGACAATAAAGGTACTAGTACTGATACCAATACCTTTTGTGTTGGTAACTCAAGTATGTAGTACAACGTTGCTAAATGTAGCCAATGTTAGCGCTCATACCCTAGGCTTATTTCCTTCATTAGCCATAGCGTTACAGTTAAGAGCATTCATATTATTTGGTGCTTTTCCTTCATCCAAGAAATTAGCAAGCAGCTGGGGTACAGCATGCCGAGGTCCTGCCAACCTCCGAGACAATAACAATATTGTGAACATTTCCAGGtagaaaacaaaaatgtagagTGTTGGCACCCTtgagggaacactacatttaataTACAAGATTTGTCATACTGCTCAATTGCATTTGGTTTAGCAGTTGTACAAAGATAAATGCTAGAACTAGAGAAAACAGACATGTAACATTTCTAGGAATAAAGTTTGAAGCTTCTGAATGTCCACCTTTGACCAGCCCAATGGAGCCCCTCAAAACAACCATGTATTGAAATGCCCAGTTGAATAAATAGGTGACATAAGATGAAAATGAAGGAGGAACTTTTACCATTAGAACATTTGCTTTCAATTAATTCAGTCAAAATGTCAAGTTTTCACAATTTGAAAAATGACCAAGAAGAAGACATGTAACTAGTTTTTAAATTCAAAAGCTAATTTTAACATTTGAATATGTCCTTATGGTTATTAGGTTGTGCTTCAtggtttctctccctttctcgcaGGGAAAAGGTAGTGTTCGCTGGAGAACCATTAAAAAGGTGTTGGTAATATAATtttacaaaaataaagaaaagcatgGTTTTCAAATAACGCGAAGAATGTCCAACGGTGGAACGGGATCTTTTTCCATTTACTTCAACCTGATACAGGTTACAATGCAGTTTTATCACAGGTGGGGCTAGGTAAGGTTTCAAAATTCACATCCTTTCTTACAATCTCAACACTGGTAGTAcaaataaagttatatatatctaccaaggagagagaggaggaccgTTTACTCCATTGCTCTTTATTTGCCTTGTGAAAACCATGCTTGGCGTGGGGAGGGGATCGTGCATGACAGAGTGGGGCTGGGTGGGATGGCGCTCGAGGAGCCAGACCACTATTTCCACAGCAGGTGTGTTAAAGGCACGCCGGGGTTACTCCTAATCCCAGCTAGACACTTCACACCCACACAACACACGCGCTCACCTGACTGcaaacacacagtacacacagaagCAGCACAAGTTACAGCCCCAGGAGTAAGGTTTGATACAGAAAAAGAGGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540323 lncRNA downstream 2381 17160189 ~ 17160397 (-) True G1347348
TU1540321 lncRNA downstream 2681 17158351 ~ 17160097 (-) False LOC110491465
TU1540226 lncRNA downstream 62058 17099498 ~ 17100720 (-) True G1347269
TU1540196 lncRNA downstream 95891 17065750 ~ 17066887 (-) True G1347244
TU1540134 lncRNA downstream 116278 16989972 ~ 17046500 (-) True G1347183
TU1540561 lncRNA upstream 75883 17287995 ~ 17293635 (-) True G1347556
TU1540613 lncRNA upstream 176987 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 177273 17389385 ~ 17391161 (-) False LOC110491477
TU1540622 lncRNA upstream 193433 17405545 ~ 17407873 (-) True G1347609
TU1540810 lncRNA upstream 339945 17552057 ~ 17569945 (-) True LOC110491488
XM_021564924.2 mRNA downstream 429674 16728503 ~ 16733104 (-) True LOC110491457
XM_021564925.2 mRNA downstream 429773 16728503 ~ 16733005 (-) False LOC110491457
XM_021564926.2 mRNA downstream 437799 16695214 ~ 16724979 (-) False LOC110491459
XM_036946309.1 mRNA downstream 437799 16695214 ~ 16724979 (-) True LOC110491459
XM_021564922.2 mRNA downstream 481214 16653966 ~ 16681564 (-) True lmf1
XM_036946352.1 mRNA upstream 93946 17306058 ~ 17352385 (-) False LOC110491470
XM_036946353.1 mRNA upstream 94485 17306597 ~ 17352385 (-) False LOC110491470
XM_036946354.1 mRNA upstream 94485 17306597 ~ 17352385 (-) False LOC110491470
XM_036946358.1 mRNA upstream 94485 17306597 ~ 17352385 (-) False LOC110491470
XM_036946356.1 mRNA upstream 94633 17306745 ~ 17352385 (-) False LOC110491470
TU1539993 other downstream 233346 16924522 ~ 16929432 (-) False G1347067
TU1539994 other downstream 233346 16924522 ~ 16929432 (-) False G1347067
TU1539999 other downstream 233346 16924522 ~ 16929432 (-) False G1347067
TU1540000 other downstream 233346 16924522 ~ 16929432 (-) True G1347067
TU1538336 other downstream 1463515 15698985 ~ 15699263 (-) True G1345561
TU1540612 other upstream 177273 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1205503 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1421919 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 2108758 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2248929 19461041 ~ 19461815 (-) True G1349896

Expression Profile