RNA id: XM_036946353.1


Basic Information

Item Value
RNA id XM_036946353.1
length 4049
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC110491470
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17306058 ~ 17352385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagagCTGCCTATGCTGCTGTtgcctcccctctctgtctgtccctgcttcGGATGGTAGAGTAGTTGGCTGTGGACCTCTGCCTCcttgtcctcttctctccttctccgttTTGACTACCAGGAGACCAGTTAGCCCCAGCGTCGTGTGTGGGCACCAATCAGAAGAGAGTGGCTCTTACCTATAAGTCCCCAAGGGTCTCTTTGCCAGCTACTGCTGCCACTCAGGAACTAGGGTTGTTCATGGTGCACAGGGACATTACTGACAGGTCTGAGTCATTTTGCATGATCACTTCCCCTGTCTGAGAGAATGAAGGAGTAGGAACATTGGAGAAGATGATTCTTTGGGCTGGCTTGCTTCTCCTGGGTTCATGGAAATTCTCAACGGTCGCCAGTCAATGCCACATGGAGTCTCATCTCAACAGGAAAAGTAGTGGAAGGACACATTTTGTTCAGCACAAGTTTTGAGTTCCAGTGCTGTGGAGTCGGACTGGACTCCTGTTTGGATTACTAGGGTTCGTGTCTGTGTGGAAGTAGCTGTAGAGTACCTGGCTCTGTGTAATCATGGGCAATGCGGCTGGGAGTATGGAGTTTCCaatggggaaggaggggaagacagTGTCGTTCCCCCCAGGCTCAGAAACCCCCCAGAAACAGGCAGCGGGGCCCAAAATTCCTATGCCGGCCGAAGAGGAGTTAGAGGAGCGCTTCAATGTGGTGCTGAACTCCATGAATCTGCCTCCAGACAAGGTGAAGATCCTGTGTCAGTATGACAGCGAGAAGAAGTGGGAACTGGTCTGTGATCAGgaacgGTTCCAAGTGAAAAATCCACCCTCTGCTTACTTGCTGAAGCTCAGAAGTTATCTTGACCAGGGAGGGATTAGTCGTAAGTTCAAGAGGCGTGTCCAGGAGTCCACACAGGTCTTGAGAGAGCTGGAAATTTCCCTGAGGACCAATCATATTGGCTGGGCTCAGGAGTTCCTCAGTGAGGAGAACCGGGGCCTGGACTTCCTAGTTGACTATATGTCTTTCGCCCAATGTGCCGTCACCTATGACATGGACAGTTTGGACAATGGGACAGCCACACCGGACAAATCTGTGGAGGACTTGACGAGGAGTGCCGGTAACTCTCCAATCCATAGTGCTTCTAAAGCTGCTCGTTCCCTTACTGTGAGATTCAACGCTCTCCACAGCAGGAAAGCGATGAGGAACTCACGCCTCGTCAGTCAGAAAGACGACGTTCACCTCTGCATCATGTGCCTCCGTGCAATCATGAACTACCAGTCTGGGTTTAACCTGGTGATGACCCACCCGTGTTGTGTGAACGAGATCACCCTCAGCCTCAACAACAGGAACCCCAGGACCAAAGCACTAGTGCTGGAGCTGCTGGCTGCTGTATGTCTAGTGAGGGGCGGTCATGACATCATCCTCTCCGCTTTTGACAACTTCAAAGAGgtatgtggagagaggagccgATTCGAGAAGCTCATGGAGTATTTCTCCAATGAAGACAGCAACATTGACTTCATGGTGGCGTGCATGCAGTTCATCAACATCATGGTCCACTCCGTTGAGAACATGAACTTCAGGGTCCATCTGCAGTATGAGTTTAGCCACCATGGCCTGGATGACTACCTCCAGAGGTTAAAGTTCACGGAGAGTGACAGGCTGCTGGTGCAGATCCAGGCCTACCTGGACAATGTGTTTGATGTGGGGGCTCTGCTGGAGGATGCGGAGACCAAGAACGCCCTGTTGGAGCACATGGAGGAGCTGCAGGACCACAATGCACAGataAGCAGCAGATtgcaagagagtgagagggaggcatTGGAGACAGTGTCAgagttggagaaacatctcatCCAGACCACCAAAGAGGTTGAGCTCCTAAAGGAGAGTCTGCGGGAGTCCTGTTCCCAAGTGACCATTCTACaacagagggagatagagagagagatagaacgagagagggaaagagagaggcagagggatagAGATCGTTCGGCCCAGGCCTTGGCGGAGCTGGAGGAGAAAGTTCAGGGGCTTGTGGACCAGCAGCTGATTCGAATGGAGCGCTCGTCCTCGGGACACCTGGACCTCCATGTCGTCCCTTTCATCCTCCCTGTTTCCATCCATGCTGAAACAGAACAAATCACGACTGTCGATGGCCCTGTGGCCCCTCCCACATCTTTAGTCCTGCCCCCACCCCCTGCTCCTCCATTACCTGGTGCAACAGAGGTCACGGCAcaagctcctcctcctcctcctccacctcctattccacctcctcctcctcctcctcctccatgctcgaCGGCAACACCACCTCTGCCCCCCCCTCTTCCAGGGCGTGGTATAGccctccccccaccacctccAAGCATTGGAATGGCCCCACCATTTGGGGGTAAGCATGATGGACACACTGGTAACAGAAACAAGAAGGCCATTCAGACTAAGTACCGTATGCCTTCATTCAACTGGCAGGCCCTCAAACCCAACCAGGTGGCTGGAACCATCTTCAATGAGCTGGATGATGAGAATGTTTTGGGGGAGTTGAACATGGACGCCTTTGAGGAGCAGTTTAAGACCAAGGCCCAGACAGCCCCGGCTGACGTGGGGACTCTGAGAGCGAAGGTGGCTCAGAAGATCCACAGCAAAGTGTCCCTACTGGAGTCCAACAGGGCCAAGAACCTGGCCATCACCCTGCGTAAGGGAGGCATGGCCACCTCGGACATCTGCACCGCTATAGAGACgtataACCAGGAAGCTCTGAGCCTGGACTTCCTGGAGCTGCTGGAGCGTTTCATCCCCTCAGAGCACGAAGTCAAGCTCATCCAGAACTACGAGCGAGACGGGAGGCCCCTGGACGAGCTCCCCGAGGAGGACCGCTTTATGGTGCGCTTTGGCAAGATCCCACGGCTAGCCCAGCGCATCAGCACACTCACCTTCATGGGCAACTTCCCCGAGAGCATCCAGCTCATCCAGCCGCAACTCAACGCAATCATCGCTGCCTCAATGTCAATCAAGTCCTCTAGCAAGCTGAAGAAGATCCTTGAGATCATCCTAGCCTTTGGAAACTACATGAACAGCAGCAAGAGAGGAGCAGCCTATGGGTTCCGCCTGCAGAGTCTCGACTTGCTCTTAGACACTAAGTCCACAGACCGGAAACAGACTCTGCTGCACTTCATAGTGAGCATCATCCAGGAGAAATACCCTGAGCTCCAAGCCTTCCACAGCGAGCTGCACTTCATGGACAAGGCTGCTCTGGTGTCCCTGGATAGTATTCTGCAGGACGTGTGTGCCCTGGAGAGGGGCATGGAGGTGACCAGGAAAGAGTTTGCCGTACAGGAAGACAACCCTGTGCTGCAAGATTTCCTCACCAGCAACAATGACCTGCTGGACTCTGTAGTAGAAGATGGCAAGACTGCCCAGGATGTGTATGAATCAACAGTGGAGTACTTTGGAGAGAACCCTAAAACCACACCTCCCTCCATGTTCTTCCCTGTCTTCGTGAGGTTCATCAAGGCCTATAAGCAAGCAGAGCAGGAGAATGAGCAGAGGAAAAAGCAGGATGTGTTGTCCAGAGAAGGGAGAACAGGGCCACCGTCGACATCAGCCAAGCCTGAAATAGCACAGAAGCAGGTACCTATGATGCCCAAGCTGCCCCAGATGGACCTGATAGCAGAGCTGAAGAGGCGGCAGGTGATCCCCCTGGTCCGGGAGGGCAAGGATGGAGCCATCGAGGACATCATCACAGACCTGAGGAACCAGCCGTACAGGCGGACAGACGGGTCCCGAGTCAGCGCCAAGTGGAAGCCCGGGCAAAAGCTTCAAGTCTCCTCCGATATTTCCCTGTGAAAGCACACACACTCGCGCTCCATTCAAACAATCACTCTCATTTCATTTCATGGATAGAGTGCACACAAACTTGAAATATCTCCCCTAGACTTAACCCAGCACTGCAGGTGATTGGTTCTACCTGTGGTTCAGCCCACAACAAACCTCACTGTTGACTGCCTGCTCTCTAAGTACAGCTTCAGGTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540561 lncRNA downstream 12962 17287995 ~ 17293635 (-) True G1347556
TU1540320 lncRNA downstream 75889 17207145 ~ 17230708 (-) True G1347345
TU1540316 lncRNA downstream 94485 17162778 ~ 17212112 (-) True LOC110491465
TU1540334 lncRNA downstream 111870 17186890 ~ 17194727 (-) True G1347357
TU1540323 lncRNA downstream 146200 17160189 ~ 17160397 (-) True G1347348
TU1540613 lncRNA upstream 36714 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 37000 17389385 ~ 17391161 (-) False LOC110491477
TU1540622 lncRNA upstream 53160 17405545 ~ 17407873 (-) True G1347609
TU1540810 lncRNA upstream 199672 17552057 ~ 17569945 (-) True LOC110491488
TU1540825 lncRNA upstream 223169 17575554 ~ 17575791 (-) True G1347807
XM_036946345.1 mRNA downstream 132663 17158314 ~ 17173934 (-) False LOC110491465
XM_036946346.1 mRNA downstream 132663 17158314 ~ 17173934 (-) False LOC110491465
XM_036946347.1 mRNA downstream 132663 17158314 ~ 17173934 (-) False LOC110491465
XM_036946348.1 mRNA downstream 132665 17158314 ~ 17173932 (-) False LOC110491465
XM_021564924.2 mRNA downstream 573493 16728503 ~ 16733104 (-) True LOC110491457
XM_021564948.2 mRNA upstream 4010 17356395 ~ 17359630 (-) True LOC110491471
XM_021564950.2 mRNA upstream 24072 17376457 ~ 17380710 (-) True LOC110491474
XM_036946364.1 mRNA upstream 36990 17389375 ~ 17393695 (-) False LOC110491477
XR_005036456.1 mRNA upstream 36990 17389375 ~ 17394265 (-) False LOC110491477
XR_002468843.2 mRNA upstream 195820 17548205 ~ 17569882 (-) False LOC110491488
TU1540318 other downstream 110468 17195330 ~ 17196129 (-) True G1347343
TU1539993 other downstream 377165 16924522 ~ 16929432 (-) False G1347067
TU1540612 other upstream 37000 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1065230 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1281646 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1968485 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2108656 19461041 ~ 19461815 (-) True G1349896

Expression Profile