RNA id: XM_021564948.2


Basic Information

Item Value
RNA id XM_021564948.2
length 1997
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC110491471
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17356395 ~ 17359630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATACTAGCTGATCTAAAAATAGTGCAGGTCCTAGTAGATAGGCTGCTAACTATTCTGAGTAGGCTACTTGCTTTCTCAGTCAACTTCAAAAGAACCATAAATGTCCAGGAGCATATTATCTCCATAGAATCAACAAAGTACCAACAAGATGGCCATGTTACCAAAAAACCTTCCCAGACCAGAGGAGTGTCAAGGAGCACAGACTCTATGGTATGACAAGAAGAAATATGTAGCCATTAACTTCATGGTGCAAAACCCCAAGGATGTTGAGGTTGATATTCAGGATACCTATATCGTTTTAAGTTGCAAAGACGTTGATGACAACAACATGTACAATCACATTTACTTCTACGACAAAGTCATGAAATTCGACTCTCAAGTGAAAATCTATGATCGCAGTATCCACATCTTGATCAGGAAGGTTAAAGAAAATGTAGCATGGCCTCGCCTTCAGAAAGATGCCAATCTCAAGCCAAATTGGATGGCTGTAGACTTCGAAAACTGGAGAGACTGGGCGAACGAAGAGGATGAGGGAATGGCGGAGTACGAACAATATGTGGAAATGATTCAGGATATAGGGAGCAAGAAAGGAGCGCCACCTGCGATGGATGATCTTGATGATCTGAGTGATTGAACATTTCTGAAGAGAGTCTTTCTCTGCATTGGACTTGGTGGACGTGGTGGTCGGTCAAAGCCATGTCGATGGACTTTGTGTATTTCGTGATGATGGTTTGCTATGAATGTGATGTGAATGAATGCTGTGTATTGCTAAATGTGTTTTCACTGTTTTCTGTGTAATTTATCATGTTTTATTGAATGTGTTATTTATTAAATCAACTGAAGCAGGGGCATCATGCAACCCAAAAATCTGAGGGGGTACAAAGACAAAGGATGGCTGGGGCGTGGTGGCCATATGTTGGAGAATTGTGCATATTTCAAACATCTGAAATAGATTTTCCCTGCTATCTAGAGCCACATTCATTTTTCTTAATtctttgtaaaaaatatatgtatatttttcctGCATATCTaagctaaaatctgggtaaaagattgaaaggaatgagagtcttattcagtacatttacaGTTATTGCTTATTTTCATAGTCTACCAACTTTTCCTGCAGGCATGCCTATAGGCATgcagatagttagacaagctagctacttgattgatagcctgaaatggcctCTTGGTAGTtagttgggagattgggaacctatctgggctagctaaagccaactctATAATATTGCTTAGTGAttaccttttactgcagtgggctaaatcagggtcacacagagtatttctgggtagtcttaaacaaatctactttgaaataaaagtatacacctcacacaaaTGGTTATGAGCTTAAAAAATGAAGACACCTGTTCCATGTCAGATATTGAGTTGACATGTGTATATTTtttagtttgcatcccaatactgcactttatatacatcacagaagactgaaatataacaaaatggtttgacatagaaacaccagatttttggtattatttaaaaataaattaaaaggtTTAGTAATtataaaattcaaaaaaatattaacattccacccatgtgGCCACTAGAGGGCGCTTTGGTCATTCAACTGCAGAAAAGGGTCGACAAACAGGGCACGTGCCCCTGTGCCCCCTATGTGCATGACACCTCTGAAATGAAGTCGTGTTTATACTTAACTGTTATGTAATAATCTAGTATATTGAAGCTTGAAATGTAACAGCCACATCACACCCTATAGGCCAAACAGTACATTAATTAATTGACTTAATCAATGAAATCTATATTTGAAAGGCACCTTTTGGATAAAAGCTGTGCACTATGAACTTTTGTATACTGCTAATACTGCTTTTAATTTTTTCTTGCTCAAAACAACGTTTTTCTGTACATAAGTTACAAAATAATTCTCTAAATATGGTGAATTGTCATTGCAGAAACAATAAATATTGGGGCAGCACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540561 lncRNA downstream 62760 17287995 ~ 17293635 (-) True G1347556
TU1540320 lncRNA downstream 125687 17207145 ~ 17230708 (-) True G1347345
TU1540316 lncRNA downstream 144283 17162778 ~ 17212112 (-) True LOC110491465
TU1540334 lncRNA downstream 161668 17186890 ~ 17194727 (-) True G1347357
TU1540323 lncRNA downstream 195998 17160189 ~ 17160397 (-) True G1347348
TU1540613 lncRNA upstream 29469 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 29755 17389385 ~ 17391161 (-) False LOC110491477
TU1540622 lncRNA upstream 45915 17405545 ~ 17407873 (-) True G1347609
TU1540810 lncRNA upstream 192427 17552057 ~ 17569945 (-) True LOC110491488
TU1540825 lncRNA upstream 215924 17575554 ~ 17575791 (-) True G1347807
XM_036946352.1 mRNA downstream 4010 17306058 ~ 17352385 (-) False LOC110491470
XM_036946353.1 mRNA downstream 4010 17306597 ~ 17352385 (-) False LOC110491470
XM_036946354.1 mRNA downstream 4010 17306597 ~ 17352385 (-) False LOC110491470
XM_036946358.1 mRNA downstream 4010 17306597 ~ 17352385 (-) False LOC110491470
XM_036946356.1 mRNA downstream 4010 17306745 ~ 17352385 (-) False LOC110491470
XM_021564950.2 mRNA upstream 16827 17376457 ~ 17380710 (-) True LOC110491474
XM_036946364.1 mRNA upstream 29745 17389375 ~ 17393695 (-) False LOC110491477
XR_005036456.1 mRNA upstream 29745 17389375 ~ 17394265 (-) False LOC110491477
XR_002468843.2 mRNA upstream 188575 17548205 ~ 17569882 (-) False LOC110491488
LOC110492844 mRNA upstream 311856 17671486 ~ 17682483 (-) True LOC110492844
TU1540318 other downstream 160266 17195330 ~ 17196129 (-) True G1347343
TU1539993 other downstream 426963 16924522 ~ 16929432 (-) False G1347067
TU1540612 other upstream 29755 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1057985 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1274401 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1961240 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2101411 19461041 ~ 19461815 (-) True G1349896

Expression Profile