RNA id: XM_021564950.2


Basic Information

Item Value
RNA id XM_021564950.2
length 3075
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110491474
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17376457 ~ 17380710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAGGTTGAGCCAGTCCCCGATGGCAGCCACCCAGATGAGCTTGACCCCCACGTCCCTGTGCAGATAGAACCAGCTTGGGATGAAACAGAAGAATGTGGTATGCAGGTCTGCCACTGTAGAGGCTAAACCATCCCTCATAATGCCCATACTAGGTCTGCAGATGGATGGCCACCTCCACCCTCAGCTGTGGAAAAGATCCATGACTGCAGTGTGGATCCAGATCAGCAACCCAGGGACGGTGCACCAAAGCTGGTAGAGCTCCTCTGGAGCTCCAGGACTGTCTGTTCCCATCAGACTTTATTCAAGGTTAGGGCATTTGTTTGCCTTCAAGTGAACGTTGTAGACAGGCTCCCTGACCTTTAGCCTACAACCCAACATGGAGCTCCTGTTTCCCAAACCGGTAAACAGAAGTTCTCTGCTCTGGAGTGATAAGCTAGCCCCTGAAACAGGATGTCTGTGTGATAGTGGATGAATGTTTTTCAACTCCAGGACTGTACGTCTCTTGGCAAAGATCGTAGCAAGAACACGTTAAGCAGGCCAATGAAAATTGATTGACCTATTGATTGACCTTTTCATGTCATTACCACTTCAACCACATCCATCGTTATCATGTGAAACGAATGGCACGAAATCAATCAAAAATGCACTGACCTTATGACCTGCTGTAATGATAAGTTAATTTACTATTTCTTTCCAATAAGCTACAGCCTAAGATGAGTCCTGGCTTGGGGGTTGTCTAATCAGACTTGTTTACAGCACGGTAAGTACCATATCCAGGACCTAGTTTTATTGGTCAGTTATCTTTTCAGCATCTCTGGAGTAAGTCCCACACTTTTTAATGATTGACTCCCTTATGTAACTGACAGGTGGGCTAGCCACAGGACACCGACCACAATTTTCACAAAATCATCAGAAATTCATTGTGTAACTGGCAGATTATCTGCAGGTCATTGAGGAATGGGAGGATTTTGCATATCGTCAACATTTATTTAGCCtttcataatataaaataaacGTCTTTTGTTTTGCGTTCAAGCCTCAGTTTTGGATTTATTCCTTTTTTCGACAGTGTGCTGGTCTCGATCTCTTCCAGCCtttcataatatgacattttttacatttcttgttttttaaatgtgtttttttgaaACTGGCCAAAAAGGGGGCTTAGTAAGTTAGTACACGTGACTCTTTTAGTTTCTATCTTATCCATTTCATGGTCTTACAATGACAACTTACTCTATTACAAGAAAAACACTGGATTTTGCATTTCAATAGAGAAAAGCAAAATCAATGCCGTTGTCCACACATCCCCTTGGTTGGCTTGTTTTGCCACAAACTATTGTGTGGGCTATTTGTTAGGTTTTATTGTGAATTCCACTGGTCAATCATAAATGTCGCTTTTTTGTCTCCATGCTGTTTCAGGGTGAGCGACACAGAGACACTGATTGACTTTTGTTTTTACCCCTCCTTTGTACTTGTTTGTATTGTCTCTCCTGTtagtactgtacaaccctcaCAAACTCCCCTGTCCTGTTGTGTTTTATTACACATGTGCAAGGTTCAAAGATCAGGTTGTGCATGCCTTTGGGTGGTGGGTCCCTCTGGTATAAAAACAACCAGCAGACTCTTACATAGCTACAGTGCTCTCCTTCTGCAACACATCTCGCGTTGGCTTCCTAGACGGACAGTTCACTAGGGACAGTTGGAAAATGGAGGCAGTCACGGATGCCTTTCAGGGCTATGGGGTGAGCACCACTAATTACCTCCAGACCAACTATAAGGATGCACAGGGTTTGTTCCTGTGGGTGTCCTGGGCTGCTGACCTCAGGAACACCTTCTTCATCTTCTTCCCCCTCTGGTTCCACCTGCGGGAGTCGGTGGGTATCAAACTCATCTGGGTGGCAGTGATCGGAGACTGGCTCAACCTGGTCTTCAAGTGGATTCTGTTTGGCGAGAGGCCGTATTGGTGGGTTCATGAAACACCTTACTACAGCAATACCACTGCACCTCACATTGAACAATACCCCATGACCTGTGAGACTGGCCCAGGCAGTCCCTCTGGCCACGCTATGGGAGCCGCAAGCATCTACTACACACTGGTCACCTCCATCCTAGCCATCATGCTGACCAAGAAGAAGACGAGAGCTTCCACCAAGGGCATGTATCTGCGGGGCACATTGTGGGCATTCTTCTGGGCAGtccaggtgtgtgtctgtctctccagaGTCTTCATTGCTGCCCACTTCCCCCACCAAGTTGTCTGTGGAGTCATCACAGGTATTGTTGTGGCCGAGGCCTTCAACAGAACCCAGTGGATCTACGGAGCCAGTCTGAAGAAGTACTTCTACACCACCGTTTTCCTGCTCTCCTTCGCTGTTGGCTTCTACGTGCTGCTGAAGGCTCTGGGCGTGGACCTGCTGTGGACCCTGGAGAAAGCCCAGAAGTGGTGTGTGAGGGCTGAATGGGTCCACATGGACTCCACTCCCTTCGCCAGCCTCCTGCGCAACATGGGCACCCTGTTTGGCCTGGGCCTGGGCGTGCACTCGCCCCTCTACACCGAGAGCAAAAAGAACAGCAGCACCCCCTTCAGGGTGGGATGTATCGTTAcctcgctgctcctgctgcacctCTTTGACTCCTTCAAGCCCCCCACGCACACCGCCGCCCTCTTCTACCTTCTGTCTTTCTGTAAGAGCGCCACTGTCCCCCTGGCAACCGTGAGCATCATCCCCTACTGCATGTCAGGAGCATTGAGCAGCATACAGAGCAAGAAGCATCTGTGAGGTCGTTGGCGGCTGACGCACATAGACTTATGTATATGGAGCTCACTCCAGAGTTGAACAGTGTTCACTGGTGCTTCAATCCTTAATCATTCCATATTGACCTTCTTCCCAAATAGCCAAAGAGATGAACAATCTATTGTGGTCTTTGTCTACCATACATCCAGTCAGTCACTGTAAATGTCTTATTTTCCTATATACGCATAGTGTGGACACTGAAACGAAAGAACTACCCAGCGTATTACTCAAGAGGCAATTAAGACACTGATTTAATtggatataaaaaaaa

Function

GO: NA

KEGG:

id description
K01084 G6PC; glucose-6-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540561 lncRNA downstream 82822 17287995 ~ 17293635 (-) True G1347556
TU1540320 lncRNA downstream 145749 17207145 ~ 17230708 (-) True G1347345
TU1540316 lncRNA downstream 164345 17162778 ~ 17212112 (-) True LOC110491465
TU1540334 lncRNA downstream 181730 17186890 ~ 17194727 (-) True G1347357
TU1540323 lncRNA downstream 216060 17160189 ~ 17160397 (-) True G1347348
TU1540613 lncRNA upstream 8389 17389099 ~ 17390656 (-) False LOC110491477
TU1540609 lncRNA upstream 8675 17389385 ~ 17391161 (-) False LOC110491477
TU1540622 lncRNA upstream 24835 17405545 ~ 17407873 (-) True G1347609
TU1540810 lncRNA upstream 171347 17552057 ~ 17569945 (-) True LOC110491488
TU1540825 lncRNA upstream 194844 17575554 ~ 17575791 (-) True G1347807
XM_021564948.2 mRNA downstream 16827 17356395 ~ 17359630 (-) True LOC110491471
XM_036946358.1 mRNA downstream 24072 17306597 ~ 17352385 (-) False LOC110491470
XM_036946364.1 mRNA upstream 8665 17389375 ~ 17393695 (-) False LOC110491477
XR_005036456.1 mRNA upstream 8665 17389375 ~ 17394265 (-) False LOC110491477
XR_002468843.2 mRNA upstream 167495 17548205 ~ 17569882 (-) False LOC110491488
LOC110492844 mRNA upstream 290776 17671486 ~ 17682483 (-) True LOC110492844
XM_021564962.2 mRNA upstream 303761 17684471 ~ 17694082 (-) True LOC110491480
TU1540318 other downstream 180328 17195330 ~ 17196129 (-) True G1347343
TU1539993 other downstream 447025 16924522 ~ 16929432 (-) False G1347067
TU1540612 other upstream 8675 17389385 ~ 17391954 (-) True LOC110491477
TU1541907 other upstream 1036905 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1253321 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1940160 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2080331 19461041 ~ 19461815 (-) True G1349896

Expression Profile