RNA id: TU1540612


Basic Information

Item Value
RNA id TU1540612
length 2196
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110491477
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17389099 ~ 17394265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttctctctataccatttgtatttcatataccttttgactattggatgttcttataggcactttagttttgccagtgtaacagtatagcttccatccctctcctcgcccctacctgggctcgaaccaggaacacatcgacaacagctaccctcgaagcatcgttacccatcgctccacaaaacccgcagcccttgcagagcaaggggaacaactacttcaaggtctcagagcgagtgacgtcaccgattgaaacgctattagcgcgcaccccgctaactagctcgggagttgataggcttgaagtcataaacagctcaatgcttgaagcacagcgaagagctgctggtaaACGcacaaagtgctgtttgaatgaatgcttacgagcctgctgcagcctaccaccgctcagtcagactgctctatcaaatatcaaatcatatacttaattataatataataacaaacACAAATActagccttaggtcattaatatggtcaaatccggaaacgatcatttcgaaaacaaaacgttaattctttcagtgaaatacggaaccgtattacattgcacaaccttaaattttatgtcataattacgtacaattctggcaaattagttcgcaacgagccaggcggcccaaactgttgcattttCCCTGACTcggcgtgcaatgaacgcaagagaagtgacacaatttccccagtttaatattgcctgctaaactggatttcTTTTAAcgaaatatgcaggtttaataaaatatacttctgtgtattgattttaagaaaggtattgatgattatggttaggtacattcgtgcaaccattgtgcttttttcgcaaatgcacttttgttaaagcatcccccgtttggcaaagttggctgtttttgttaggaataaatagtcttcacacagttcacaacgagccaaacggcccaaactgctgcatataccctgactctgttgcacagaacgcaagagaagtgacacaatttctctagttaaaagaaattcatgttagcaggcaatattaactaaatatgcaggtttaaaaatatatacttgtgtattgattttaagaaaggcgttgatgtttatggttaggtacacattggtgcaacgacataGCTTTTTTTTCCGCGAaagcgcttgttaaatcacccgtttgacgaagtaggctatgattcaatgataaattaacaggcaccgcttCCATTATATgcacgcaggacaagctagataaactagtaatatcatcaaacatgtgtagttaactagtgatttttTTGATTGGTTTTTATAacatacgtttaatgctagctagcaccctaccttggctccttgctgcacttgcataacaggtagtcagcctgccacgcagtctcctcatggagtgcaatgtaatcgtccatgatcggtgtccaaaaataccgattgttatgaaaacttgaaatcggccctaattaatccttcattccgattaattggtctaCCTCTAATCAGGACGCACAACTGCAATGGATTTAGACTACTAGAGTCTATATGTATTAAAAGGTGCACCATTTTTATTGTTGTCTGTACCTAAGGTCTCATCTAAGTGTATGCTACATTGAACCATGGCTCCACCACTGATTTGGTGTCTGCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540561 lncRNA downstream 95750 17287995 ~ 17293635 (-) True G1347556
TU1540320 lncRNA downstream 158677 17207145 ~ 17230708 (-) True G1347345
TU1540316 lncRNA downstream 177273 17162778 ~ 17212112 (-) True LOC110491465
TU1540334 lncRNA downstream 194658 17186890 ~ 17194727 (-) True G1347357
TU1540323 lncRNA downstream 228988 17160189 ~ 17160397 (-) True G1347348
TU1540622 lncRNA upstream 13591 17405545 ~ 17407873 (-) True G1347609
TU1540810 lncRNA upstream 160103 17552057 ~ 17569945 (-) True LOC110491488
TU1540825 lncRNA upstream 183600 17575554 ~ 17575791 (-) True G1347807
TU1540870 lncRNA upstream 204212 17596166 ~ 17607260 (-) True G1347851
TU1540899 lncRNA upstream 238678 17630632 ~ 17630937 (-) True G1347877
XM_021564950.2 mRNA downstream 8675 17376457 ~ 17380710 (-) True LOC110491474
XM_021564948.2 mRNA downstream 29755 17356395 ~ 17359630 (-) True LOC110491471
XM_036946352.1 mRNA downstream 37000 17306058 ~ 17352385 (-) False LOC110491470
XM_036946353.1 mRNA downstream 37000 17306597 ~ 17352385 (-) False LOC110491470
XM_036946354.1 mRNA downstream 37000 17306597 ~ 17352385 (-) False LOC110491470
XR_002468843.2 mRNA upstream 156251 17548205 ~ 17569882 (-) False LOC110491488
LOC110492844 mRNA upstream 279532 17671486 ~ 17682483 (-) True LOC110492844
XM_021564962.2 mRNA upstream 292517 17684471 ~ 17694082 (-) True LOC110491480
XM_036946367.1 mRNA upstream 321926 17713880 ~ 17743000 (-) False LOC110491482
XM_021564964.2 mRNA upstream 321926 17713880 ~ 17868844 (-) False LOC110491482
TU1540318 other downstream 193256 17195330 ~ 17196129 (-) True G1347343
TU1539993 other downstream 459953 16924522 ~ 16929432 (-) False G1347067
TU1539994 other downstream 459953 16924522 ~ 16929432 (-) False G1347067
TU1539999 other downstream 459953 16924522 ~ 16929432 (-) False G1347067
TU1540000 other downstream 459953 16924522 ~ 16929432 (-) True G1347067
TU1541907 other upstream 1025661 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 1242077 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1928916 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 2069087 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 2299738 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile