RNA id: XM_021564964.2


Basic Information

Item Value
RNA id XM_021564964.2
length 5454
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110491482
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17713880 ~ 17868844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAGGGGATGCGCAACATCTCCACACTAGGCTACATTCATTCTCATGGTCTCACATTCAAAGCGAATATTGCTACTTTTAAAGACGTTTTTAGAATCAGAGGTAGATGTGTTTGTACTTTACAGTGTTAGTCCTGTAGAGAGTGGTAGTCCTGTAGAGAGCGGTAGATAGCTAGTTTTATTAAATTGTTTTATGCGGGCCCAGAGCATTGCATTGGCCCAGAGCAGTGTGCGCCCCATACTGTACATATGCGGAGGGAGGAGCAATAGTATATCTCTTGATTCCATTTCCCTGTCGTGGCAGCCTACCGAAACGTTACTGGAGCACCTTTTTACACACACCTCATGGGAAATCCCAAATAAAGAGCACCTTGTGACTTTGTTTAAGTGCAAATTAGGAACCGCACGAGACGTTTTGACGGCAAGCGGCGCTTTGCAGAGgaatttttttaaatagaaaagcCCGGTACTGTGCAGTTGCATACCCTACCACTCCACTTGCGCTTTATACGGAGAGGCTTTGACTTTTTCATCCTCGTTTCAGTCTCAAAACAACCGTATTCCCGTCCAAAACAGTAGAAGAACCTGACGGTTGTGACATTTTAACAAGAAATTTCACCTGGAAATCAAGTGGATCCAATTGTTTCTGGGCGGAGGCCAACGGTCACACAGAACAAACTACAGGCCTGGGGATATCATTAACCTCCACACACAACAGGATACTGATCTTGTCCGGTCCAGTCCATTCGTCAGTCCTAGGGCCAGCACAGGGGGGTCGCTCCGGAGGCTAGAGCCCGCCCGGACCGGGACCCTGTGATGTCGCACTGACTGACCCCCCTACCTGCGAATGACCAGCGAGCATCCGAGGGTGGGGCCCGCCTCAGTCTCGCATGATTGGCTGTTGGATGGAATTAAGGTGAATGGAACACATGCCCAAGGAGCAGGACCCTAGCCtatcagagggagaggagaaacgGTGGATCGATGGCCCGAAAAGGAAAAGAAAGAGCAGCTCATGTTCGGTGAAGAGCATGTCTGAAATGAAGGGATACGGACAGACTGGGTCAGAGAATACAGgGTACATCCCCAGCTATCTGGAAAAGGATGAAccgtgtgtggtgtgtggagaCAAGGCCACTGGCTACCATTACCGCTGCATCACCTGTGAGGGCTGCAAGgGTTTCTTTCGGCGGACGATTCAGAAGAACCTCCACCCCGCCTACTCCTGTAAGTACGATGGCTGCTGCATCATCGACAAGATCACCCGCAACCAGTGCCAGCTGTGCCGCTTCAAGAAGTGCATCGCAGTGGGCATGGCCATGGATCttgtCCTGGACGACTCCAAGCGGGTGGCCAAGCGGCGTCTGATCGAGGAGAAccgggagaagaggaagaaggaggagatGGTGAAGACCCTGCAGAACCGGCCAGAGCCCACCGGCTCAGAGTGGGAGCTGATCCGCATGCTGACCGAGGCCCACCGCCACACCAACGCACAGGGCTCCCACTGGAAACAGAAACGCAAGTTCCTGCCGGAGGACATAGGTCAGTCTCCGGTGGCCCCCACGTCGGACGGAGACAAGGTGGACCTGGAGGCCTTCAGTGAGTTTACCAAGATTATCACCCCTGCCATCACCCGCGTCGTCGACTTTGCCAAAAAACTGCCCATGTTCTCGGAGctGCCTTGTGAGGACCAGATCATCCTATTGAAAGGCTGCTGTATGGAGATCATGTCGCTGCGCGCCGCCGTGCGCTACGACCCAGAGAGTGAGACGCTGACCCTTAGCGGCGAGATGGCAGTCAAGCGGGAGCAGTTGAAGAACGGCGGCCTGGGCGTGGTGTCGGATGCCATCTTCGACCTGGGCAAGAGCCTGGCACAGTTCAACCTGGATGACACGGAGGTGGCGCTGCTGCAGGCCGTGCTGCTCATGAGCTCAGACCGCTCGGGCCTGACGAACATTGACAAGATCGAGAAATGCCAGGAGACCTACCTGCTGGCGTTTGAACACTACATCAACTACCGCAAGCACAACATTCCCCACTTCTGGCCCAAGCTGCTGATGAAGGTGACGGACCTGCGCATGATCGGGGCGTGCCACGCCAGCCGCTTCCTCCACATGAAGGTGGAGTGTCCGACGGAacttttcccccctctcttcctagAGGTCTTCGAGGACCAGGAAGTGTGAGTGGCACCCCCGGAGGAAGTAGTGGAGCGACTTGAGGCATCTTGGGAAAGGAAGGGATGTTTTTCTGAAGCTGGGAAGGATTTTGGCAGGACTTGTGTTTTTCCGACATTTACGTGGTAAACAACAAACAACGCAACCAGCAGCAGGAGTCAAACAAACAGGATATCATTTTTTTTGACCTACCACCTCTTCATACCTGTTTTTGGGAATCAGTTTGGCGGCCCTCCCTGTCTGAGCACGGTGTTTTATCCAGTGGGAGTTGCAGCCCTTTGCCaaggccaacacacacagacacacacactctggctcCCCTCTCAGAGCCCTATTGGAGGCACCTCAGTTGTCACACATTGCCACTAGATGGTGTTCTTTGCAGGTTTGCACCTGTTTGAATTTATGGCAACCATCTTTTAAAACCGGTCAGTTAATTATACTCCCCGAATTAGTGTAAGACAATGATTCAGGAGATACGTCACTGACAACACACCcggacacacacagagttactGAGTGTGCCATATAACTCCTACCGTAGAGTAAAGCTACTAGTACCTACAATCACGGCTGAACACAACTGAGCCATTTTCAGACTGGACCGTGAGCATGTTTTTAACCAAGTCAGGTGCTGTATTATAAGGCTACTCCAGTTGTCTGAAATGTGTAAATGTGTAAAACTACAGACCACGGCTCCGTATCTACCTTTGGTTCTGTCATTAGGCAAGCGCCTGTGACTGGCACTCtctcaaacccacacacacactgggcagaCCTGCCTTGTCATTGCCTGTGCTTCTGGTGCCAACAGTAGACCCTCTCATGAATGACAATTGAGCCCTTTTCTCTCCAAGGAAGGTCATAACAGTgaacaaaagagagaaagaaggagaagcgCCACTGGCAGGAGTtctcagaggagagggggggggagagggaaaaTATAGATTTAATAGCTGGCAAGCAGATTCAGTGCCTGGAGACTGAACAgcatcctgaaacacacacacacacacacacccctaccctcAGAAACTCAAAGCCTtatttactgtatatactgcTGTGCTGTAGCCCTGACCTGCAGGGTAAGTAAGTCTGAATCCGCGCCTGTGTGACTCAGCTCAGTATGGCCCCTTCAGGCTTCCATACTCAGTCGGTCGTTACTGTAGGGGTCACTGAGAAAGGGCAAGGCCAATGACGGCTGCCATTTACCTCAAAGTGGGCACACCCTCAAGGCTGGGGCGCCACCAGGCTCTACCTCACCTCTGGACACAGGGCAGCTGCCCCCAGcctcctcccacacacacacttttaaggATACTCAACAAACACACATAGGCACGTGTGACCTCGTAGGCACACATACATTAAGACAAATCATACAAACACAGGATACACAATGTCAGTGTTATCACTCAGACAAAAGGAAATACCACTGAAGACAGGAGGGCCTGCCTTTCCCTACGGTCACTTATCTCTTTTTCGGGGGAGGGGAGGATGGTAACCATTATGTTCAGCTTTTCTCTTTTTTGTTATGTGGGACCAAGTTTCTCAATTTGGAatcactctcttttttttcttctgttgaaaCTGAAGCAAATCAATCACGTGACGGAGTACAATGGACAGTCCAGCTGTCACCCTGGAAGAGGAGCGATACACCGTGAGGAAGCGTAGAACCCCAAGGTGGCCAGGCCAGGCCACTGGCTGTGTTTACCACTGTTTTTGAGGGGAAAAAAGTTCAAATACAACATATTTTTATTGAATGCCAAGCAGTAGTTTTTGAACGAGTGAACGAGGcggagggagggatgaatggacGGATGGGTTTCAGCTCCCCGGGAGCATGTGGATGAACGCCTGAAGACGCGGAGCGACGGGCGGGATCGGGATGGCGGGTACTCATAGCAGATGGCCAAGCGTCGCTGCCTCGACCTCAACCGCCGTAGGAGGAGTCCAAACTCAACCTCAACCGCTGGAGGAGGAGTCCAAACTCAACCTCAACCGCTGGAGGAGGAGTCAACCAAGAAATCCACTGTAAGCAGACCTCAGACCGCTCTGGTGGAGCAGCCAGAATCCCCTTCCACAGTGCCCCACCCTCCCACTCCACTAGTCTCCCCACCCCCGGCCCTGGCCCAAGCAACGCTGGTCTGGGTTTTGCACTACTGCAGTGGTCCAAACCCCTCTCCCCACCCTCATCAGCAACTGCACAACCTAGCCCCAACTCATCTGTCAGTCATGAACCTTCCTCTGGGAGTCCTGGCCTACTCTAATGGAAGCCCACTGGGACGGGGCTCCCAACCAACCCAGTCACATTGTCAGTATTAAATCAACAGCCTTCCTCCAACCGTCACCCACTGGGCAGGAGACGTCCCTGGACACCAAACGGAATCTAGGCCTCTCCCTTGTGAGACAAGGATGGCCATAGCAGCTCACTTAGGGTGGCATCGCCGAATGAATGTGAACAGCGAAGGAGCAGTGGGAGCGAGTGAacgagagagtaggagagagcgAAGGGAGCGGGACAGAGAGACTTCCTTCATCTGGCATGGGTTAGAGGGGGATCGTCGCCCGTTGTCGAAGCACCGTTTGTGAACTTGGAGAAGGGGGAGATGGCAGTATATCAGATGGTCTCCCCCTTCACTTCCGCATTGTAACATTTAATCCCCCCCCTCATTTCCACAAATACCCCCTTCAGCTTTCCATAAGGAGAGCCACCAACTTTCAAATGGAGACGATCGGCAAGAGAAACAGAATCGGCACTCAATGGATTAAAttccaagcttctttgaaaaaGAATCAATAACAGAAAAAAAGTAATCGCAATAGTGATGTCCTTCATTCTCGTGAGCCGATTGGGTATGTGTGTTACAATAGGGGTTGAAATGCTGCTTTACCTTCTGAGGAATTtttttttgggggagggggaTATGATTATGAACCCAGAAAAGCGAAATGAGGAAAAGATGACTTtaaaaagactcctgaacaaaAGTTCAACGCTTGGAGAATAAGCAGTTTCTTTCTCTCTACATTTTATCTCAATGTTATTTTTTGTTGATGTTTGTTTATGACGCTTAGACTGCTCTGTGTAAAACGGGAAAAAAAGAACAGCCGTAGTCACTTTTTGACGATGCGTGCAGTGTAACGTAGACAGAAATGTCACTTATTTTTCACATCACCTATAGTTTGTGTTGACTTCTCTGTTGTCTGTGTATTTGTCCGATTGTCCGTCCCTTTTATCAAGAGGAATttacaacaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541080 lncRNA downstream 1153 17709411 ~ 17712727 (-) True G1348033
TU1541083 lncRNA downstream 5512 17707549 ~ 17708368 (-) True G1348035
TU1541084 lncRNA downstream 6414 17707119 ~ 17707466 (-) True G1348036
TU1541074 lncRNA downstream 7498 17703731 ~ 17706382 (-) True G1348032
TU1541112 lncRNA downstream 10580 17703025 ~ 17703300 (-) True G1348064
TU1541189 lncRNA upstream 8543 17877387 ~ 17877616 (-) True G1348135
TU1541227 lncRNA upstream 34583 17903427 ~ 17903688 (-) True G1348173
TU1541235 lncRNA upstream 41277 17910121 ~ 17910352 (-) True G1348181
TU1541236 lncRNA upstream 42066 17910910 ~ 17911206 (-) True G1348182
TU1541676 lncRNA upstream 105737 17974581 ~ 17980256 (-) True G1348575
XM_021564962.2 mRNA downstream 19798 17684471 ~ 17694082 (-) True LOC110491480
LOC110492844 mRNA downstream 31397 17671486 ~ 17682483 (-) True LOC110492844
XR_002468843.2 mRNA downstream 143998 17548205 ~ 17569882 (-) False LOC110491488
XR_005036456.1 mRNA downstream 319615 17389375 ~ 17394265 (-) False LOC110491477
XM_036946364.1 mRNA downstream 320185 17389375 ~ 17393695 (-) False LOC110491477
XM_021564971.2 mRNA upstream 112545 17981389 ~ 17983893 (-) False ormdl3
XM_021564972.2 mRNA upstream 112545 17981389 ~ 17983893 (-) True ormdl3
XM_036946369.1 mRNA upstream 157670 18026514 ~ 18073388 (-) False LOC110491491
XM_036946370.1 mRNA upstream 157670 18026514 ~ 18073389 (-) True LOC110491491
XM_021564977.2 mRNA upstream 211428 18080272 ~ 18088335 (-) True LOC110491492
TU1540612 other downstream 321926 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 517751 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 784448 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 548771 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 765187 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1452026 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1592197 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1822848 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile