RNA id: XM_021564971.2


Basic Information

Item Value
RNA id XM_021564971.2
length 973
RNA type mRNA
GC content 0.51
exon number 4
gene id ormdl3
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17981389 ~ 17983893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCTGAAAATGATGACGTTCTACATGAATTGCTGGCTGGTAGTGGAAGTGGAACTGTTTAGCCTGAATGTCGGGCTATAAACTGAAGAATACTTGAATAACATTGCATAAGAAAGCAATAAGAAGGTATTTGAATGAATGACTAATCGAAACGATATAGCAGTCTGACCTATTGATGCCAATTACCTAACCAGAGAAGGCTATAGTGAATAAGAGGAAAACAGCGATATAACGGACTGAAGCTAAAAGTGCGATTGAAGCCATTTTCTCCTACGAGGAGCGTGGTAACGTGACATCATGAACGTGGGCACGGCACACAGCGAGGTGAACCCCAACACACGGGTAATGAACAGCCGGGGCATCTGGCTCTCCTACCTCCTGGGCATCGGCCTGCTGCATGTCATCCTGCTCAGCATCCCCTTCGCCAGTGTGCCCGTGGTCTGGACGCTCACCAACCTCATACACAACCTGtgcaTGTACCTGTTGTTACACTTGGTGAAAGGAACCCCGTTTGAAACTCCGGACCAGAGCAAGGCTCGCTTCTACACATACTGGGAGCAGATGGACTATGGTGTACAATTCACTGCCTCACGCAAGTTCCTCACCATCACTCCTATCGTCCTCTACATCCTCACCAGCTTCTACACCAAGTATGACCGGGCCCACTTTGTGGTCAACACGGTCTCCCTGATGACCGTGCTCATTCCCAAGCTCCCCCAGCTTCACGGAGTTCGGATCTTTGGCATTAACAAGTACTGATGGGGCGGAAGAGGACACCGCCATtcctccatctccctgtggactgtAAACACAGAGTATCAGGCCCCGCCGTATTGGCCCCCAGCCCATAGGGATCCATGGCCCCTCTCTGGCTCACAGGGCTATTGAGCACTCTGCTAAATGAAACCTATGGGCGATAAACAACACAGAATTGACTTACAGGGCTCGGCTGGGTCCGAGCTCCTATGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541676 lncRNA downstream 1133 17974581 ~ 17980256 (-) True G1348575
TU1541236 lncRNA downstream 70183 17910910 ~ 17911206 (-) True G1348182
TU1541235 lncRNA downstream 71037 17910121 ~ 17910352 (-) True G1348181
TU1541227 lncRNA downstream 77701 17903427 ~ 17903688 (-) True G1348173
TU1541189 lncRNA downstream 103773 17877387 ~ 17877616 (-) True G1348135
TU1541727 lncRNA upstream 90475 18074368 ~ 18074619 (-) True G1348626
TU1541728 lncRNA upstream 91260 18075153 ~ 18075400 (-) True G1348627
TU1541730 lncRNA upstream 94651 18078544 ~ 18079050 (-) True G1348629
TU1541733 lncRNA upstream 108595 18092488 ~ 18095817 (-) False G1348630
TU1541734 lncRNA upstream 108595 18092488 ~ 18095817 (-) False G1348630
XM_021564964.2 mRNA downstream 112545 17713880 ~ 17868844 (-) False LOC110491482
XM_021564965.2 mRNA downstream 112545 17713880 ~ 17868844 (-) True LOC110491482
XM_036946367.1 mRNA downstream 238389 17713880 ~ 17743000 (-) False LOC110491482
XR_002468842.2 mRNA downstream 253593 17722887 ~ 17727796 (-) True LOC110491487
XM_021564962.2 mRNA downstream 287307 17684471 ~ 17694082 (-) True LOC110491480
XM_036946369.1 mRNA upstream 42621 18026514 ~ 18073388 (-) False LOC110491491
XM_036946370.1 mRNA upstream 42621 18026514 ~ 18073389 (-) True LOC110491491
XM_021564977.2 mRNA upstream 96379 18080272 ~ 18088335 (-) True LOC110491492
XM_036946371.1 mRNA upstream 115066 18098959 ~ 18222910 (-) False myo1d
XR_005036457.1 mRNA upstream 118357 18102250 ~ 18222915 (-) True myo1d
TU1540612 other downstream 589435 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 785260 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1051957 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 433722 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 650138 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1336977 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1477148 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1707799 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile