RNA id: XM_036946369.1


Basic Information

Item Value
RNA id XM_036946369.1
length 4252
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110491491
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18026514 ~ 18073389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGTATCTGGTCAAAGATTTCGTCGCCAACGTGTACGTGATGACATCACTTCATTAGCAACGTCGATCCCGCCCACTCCATTTTTCAAGCCTGTAGTGGAGTTCAACGCACGGTTGTGCTGACAGCACTGTTGGGAACTTTTATGCTGAATTGCATTTGAAAAACGACAACAAACACCAAGATGGCCGGCCGGACTCTGCAAGCTGGGCGATGTCCAACAGATGAACTGTCACTGACCAACTGCGCAGTCGTGAGTGAGAAGGAGTCACAGTTTGAACATCACGTGACGGTGAGAACCACGCCGACCCACAAGTTTGTGTTCACAGTGAAGACCCACCAGAGTGTGGTCCCAGGGACCATCGCCTTCAGTCTTCCCCAGAGAAAATGGGCAGGCATCTCCATTGGTCAGGATGTGGAAGTGACCGGCTACAACTTTGACAAGTCCAAGCAGTGTGTAGGCACCGTGATAGTGGAGATTGACTTCCTGCAGAAGAAGAGCGTGGACAGCAGCCCATACGACTCAGACAAGATGGCTGCAGAGTTCATCCAGCACTTCAACAGCCAGGCCTTCAGTGTAGGCCAGCAGCTGGTGTTTAGTTTCTGTGAGAAGCTATTTGGCCTGCTGATAAAGGACATCGAGGCCATGGACCCCAGCATCCTCAAGGGAAATGCAGGCTCTGGGAAGAAGCACAATATTGACATTGGCTTGTTGCTGGGCAACAGCCAGGTGGTTTTCGAGAAGGCAGAGAGCTCCTCTCTTACCCTCATTGGGAAAGCGAAGACCAGAGAGTCTCGTCAGTCCATCATCAACCCAGACTGGAACTTTGAGCGCATGGGCATTGGTGGCCTGGACAAGGAGTTCTCTGATATCTTCCGTAGGGCCTTCGCCTCTCGAGTCTTTCCTCCAGACATCGTGGAGCAGATGGGCTGTAAGCACGTGAAGGGCATCCTATTGTTCGGGCCTCCTGGCTGTGGTAAGACTCTGATGGCCAGGCAGATTGGGAAGATGCTGAACGCCCGCGAGCCCAAGGTGGTCAACGGCCCTGAGATCCTCAATAAGTACGTGGGAGAGTCCGAGGCAAACATCAGGAAGCTGTTCGCCGACGCAGAGGACGAGCAgaagaggCTGGGCGCCAACAGTGGGCTGCACATCATCATCTTTGACGAGATCGACGCCATCTGTAAGCAACGTGGCAGCATGGCAGGCAGCACAGGTGTCCACGACACGGTGGTCAACCAGCTGCTCTCCAAGATAGACGGAGTAGAGCAGCTCAACAACATCCTGGTCATAGGAATGACCAACAGGCCGGACCTGATAGACGAGGCCTTGTTGAGACCAGGCAGGTTGGAAGTCAAAATGGAGATCGGTTTGCCTGATGAGAAGGGGCGTGTCCAGATCCTCAACATCCACACGGCTAAAATGCGTCAGTTCAACCTGCTGGGCAGCGACGTGGACGTCAGCGAGCTGGCCGCCGAGACCAAGAACTACAGCGGAGCCGAGCTGGAGGGGCTGGTCAGAGCTGCCCAGTCCACTGCCATGAACCGACACATCAAGGCCAGTGCCACCGTGGAGGTGGACCTGGAGAAGGCTGTGAATCTGCAGGTCCACAGAGATGACTTCCTGGCCTCGCTGGACAACGACATCAAACCTGCGTTTGGTACTAACTCTGAGGACTATGCCAGCTACATCATGAATGGCATCATAAAGTGGGGTGACCCGGTGACTGCTGTGCTGGATGATGGGGAGCTGCTGGTGCAGCAGACTAAGAACAGCGACCGCACACCGCTGGTGTCTGTGCTCCtggaaggtCCCCCCAACAGTGGAAAGACGGCCCTAGCTGCTAAGATCGCAGAGGAATCCCAGTTTCCCTTTATAAAGATCTGTTCTCCTGACAAGATGATCGGTCACTCCGAAATCGCTAAGTGCCAGGCCATCAAGAAGATATTTGAAGATGCCTACAAGTCCCAGCTGAGCTGTGTAGTGGTGGACGACATTGAACGCTTGCTGGACTATGTCCCGATTGGCCCTCGTTTCTCAAACCTGGTCCTTCAAGCTCTGCTGGTTCTCCTCAAGAAACCCCCTCCCAAAggccgtaAGCTGCTGATCATTGGCACCACCAGCAGGAAGGACGTGCTGCAGGAGATGGAGATGCTGGACGCCTTCAGTACCACCATCCACATCCCCAACATCTCTAGAGGAGAGCAGCTGGTTGAAGCCCtggagATGCTGGGGAGTTTCCAGGAGAAAGAGCGGGCAGCCATTGCCAAGGCTGTGAAGAGCCAGGCGGTGTGGATCGGCATCAAGAAGCTGACGATGGTCATCGAGATGGCAGTGCAGATGGATCCTGAATACCGAGTTAGTAAGTTCTTGACCCTGCTGAGAGAACAGGGAGCGCTGGGTTCTGACAAGCACATAGCCATCTAAGCCCATGGTGGAGCTGCATTGCCCAGCAGTAGCTGCCTCTCACATGGGCGAGGAGTGGAAGCCCGGATGCGGCCGGCAAGATGGAGTGAGCGAGAGATTTTATATCTCCGACCTAATCTGGCCATCGCAAACGCTCGCCACGTAAATCGCTGTACCGTGTGTTTCCATGGCAACTCGATCGACCAGCGTCGTCCTCCTTCCTCATCAGCACtacttctctgtgtgtgtaaacTAAGTCTGTAATTGTTATTTCTGAAGGCAAAGTGTTGTGATTCAAATGacactattccctgtatagtgcactaggTTCTGACCAGAtgtctatgggccctggtcaaaagaagtgcactgtataaggaatagtgtgccatttgagatgcatccAAAGTGTTGTGATTTGTGCTGCTAGCACTCCAGGGGATTTTATGTATAAAAATCAAATGTATGTTTATAACTAAACATGAGAAAAGTGTATGCAAAaccatgtacactgagtgtatgaaccattaggaacaccttcctaatattgagttgcactcccttttgccctcagaacagcctcaatttgttggcgCATGGACTCAACAAAGTGTCGAAAGCGTtacacagggattctggcccatgttgactccaatgcttcccactgttgtcaAGTTTTCTGTCTGTCCTTTGGGTaggggaccattcttgatacacaggggaaactgttgcgcaacaacaacaaaaaacagcaacgttgcagttcttgacacactcaaaccagtgtgcctggcacatactaccataccccgtctaaaggcacttaaatatttagtcttgtgccattcagaggttaaATGGGCATctacacaatccatttctcaaaTGTCTGTCTCAAGGCTGTcccaaatccttctttaacctgtcgcctccccttcatctacactaattttgagggatcctagctttcacctggtcagtctgtcatgggaaGAGCAGGTGTTTATAATGTTTTGTACTCTGTGTAAATGATGACCTATTTGAGTTTGATGCAACTCCAACATTGGGCATGATGCATTTGACAAAAGCAATTTTCAAATTGTATGCATAACTGACCAGTCAAACTTCTCTATAAATGCATCATATGCACATGATGGTGAAGCTGATTAATTGCagcatgtattgtgtgtgtgtgctctactatattatgtgCTTAGATTTTATTATCATTCCAGGAAATGATGGTTCCAAGCCTTACTCTTAACTCTACTCACACAAAACCTAATAGGACCAAAGTATCACAGCAGTCTGTTTTGTGAATAATTGTTATGAATTAATAATAATGTTACTAATATTGATTAGCTAGTAACTGGAAAAAGTGATTCATTTTCAGACCCAGACCATTTTAGAAGGAAACCTCTCCCcaaccactcacacagacacacgtgtGCGAACACATGATACTGTTGACAGGTTTTTTTTTCTGCATTGTGCTGTTCTCTATGAAGGATCTCTGGAGACCCTCTGGCATGCCTTTgcattttagaaacacttaaaataaggatCGTGTTGTGACTTTTTGATAAACATGTTCATCTCAATATTTTCGGCTCTATTCACTCTCTGAttcaaaaatgctaattagcatcaaagtagacatcacaCAAAACttcaaatccctgcaagctcctgcacgtcatctctagcagGTGCGTTTGTTAACAGGTATTGGGTCAAAGTGCATAAGACAGTTTACAGAATTATCCATTTAAAGAAATCTAAGtgtttggtcccatgtttcatgagctgaaataaaagatcacagaaatcttccatatgcacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541676 lncRNA downstream 46258 17974581 ~ 17980256 (-) True G1348575
TU1541236 lncRNA downstream 115308 17910910 ~ 17911206 (-) True G1348182
TU1541235 lncRNA downstream 116162 17910121 ~ 17910352 (-) True G1348181
TU1541227 lncRNA downstream 122826 17903427 ~ 17903688 (-) True G1348173
TU1541189 lncRNA downstream 148898 17877387 ~ 17877616 (-) True G1348135
TU1541727 lncRNA upstream 980 18074368 ~ 18074619 (-) True G1348626
TU1541728 lncRNA upstream 1765 18075153 ~ 18075400 (-) True G1348627
TU1541730 lncRNA upstream 5156 18078544 ~ 18079050 (-) True G1348629
TU1541733 lncRNA upstream 19100 18092488 ~ 18095817 (-) False G1348630
TU1541734 lncRNA upstream 19100 18092488 ~ 18095817 (-) False G1348630
XM_021564971.2 mRNA downstream 42621 17981389 ~ 17983893 (-) False ormdl3
XM_021564972.2 mRNA downstream 42621 17981389 ~ 17983893 (-) True ormdl3
XM_021564964.2 mRNA downstream 157670 17713880 ~ 17868844 (-) False LOC110491482
XM_021564965.2 mRNA downstream 157670 17713880 ~ 17868844 (-) True LOC110491482
XM_036946367.1 mRNA downstream 283514 17713880 ~ 17743000 (-) False LOC110491482
XM_021564977.2 mRNA upstream 6884 18080272 ~ 18088335 (-) True LOC110491492
XM_036946371.1 mRNA upstream 25571 18098959 ~ 18222910 (-) False myo1d
XR_005036457.1 mRNA upstream 28862 18102250 ~ 18222915 (-) True myo1d
XM_021564980.2 mRNA upstream 150096 18223484 ~ 18226919 (-) True LOC110491495
XM_021564981.2 mRNA upstream 158138 18231526 ~ 18242108 (-) False pdk2a
TU1540612 other downstream 634560 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 830385 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1097082 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 344227 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 560643 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1247482 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1387653 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1618304 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile