RNA id: XR_005036457.1


Basic Information

Item Value
RNA id XR_005036457.1
length 3725
RNA type mRNA
GC content 0.52
exon number 23
gene id myo1d
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18098959 ~ 18222915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCACTGACTAGGCATACTGAATTGGATTTGAAGAACTTGTCAAAATGACTAGTCACCCGAGAAATGTATAAAACTCTTCAGTTGTCATGGGAATTGTACTTTTTTCAAAATGTACACATGACAAGTTTAGACCAACACTTCTGACCAGGGGGTGGAGCGTTGCGAGGCGGGTAAGGATTGTATTCGTCTGTATAGAGTCGAGACGAGAAATTCAAGGAAAGGGCTCTATTGATAGGCGTTTAGTGTAACGGGACTCCGGACAATaccttttcggcgaaagcaacaAGTGTCTGGATATGAAAGCATATTCTGAACTAACCATTCCTATTTGAAACCGTCCGTTGTATTGAGAACAAATAATTAGATACGTTTTGCTATAAGTTTGGCTGTTTTGTATCGTTTCCTTAtttttttgcagctcattcaaAATGAGTAAAAAATAACATCGTATCACTTGTACTGTTGACTAACGTTACTTGAATGAAGACAATGCTCCTCGACCATTTAGAGCTTGAATAGGTGCATTGAACAGCTCGCCATTGTTTACCTGGTGTCGCGGAGGACCACCTCAAAACAGTGAAGTTGTCtttttcaaaaaagtattttcttCTGaaccgatttaaaaaaaatacaacatgGCAGAACACGAGAGTCTGGAGTTTGGAAAGGCTGACTTTGTTCTTCTGGACAATGTTTCTTTGGAGGAATTCATGGCTAACCTAAAGCTCAGGTTTGAGAAGGGTCGTATCTACACCTACATCGGCGAGGTGGTGGTGTCGGTTAACCCTTACCGTGCCATGAACATCTACGGTCGAGACACCATCGAGCAGTACAAGGGCCGGGAGCTGTACGAGCGACCGCCACATCTCTTCGCCATCGCAGACGCAGCCTACAAAGCCATGAAGAGGAGGAACAAGGACACCTGTATTGTCATCTCAGGGGAGAGTGGCGCCGGGAAGACTGAAGCCAGCAAATATATAATGCAATACATTGCTGCTATCACAAACCCCGGGCAAAGAGCGGAGGTGGAAAGggtgaaaAACATGCTGCTGAAATCCAACTGTGTACTAGAGGCCTTCGGCAACGCCAAGACCAACCGCAACGACAACTCCAGCCGCTTCGGCAAGTACATGGACATCAACTTCGACTTCAAGGGAGATCCCATCGGGGGCCACATCAACAACTACCTGCTGGAGAAGTCCAGAGTCATCTTCcaacaggagggggagagaagcttCCACTCTTTCTACCAGATGGTTAAAGGAGGTCCTGAGTCTCTCTTGCGGTCCCTCCACGTCTCGAAGGACCCCACAGCCTTCAACTACATCAAAGTGGGAGGCCACATCAAGtCGTCCATCGACGATGGTGGCGATTTCAAAGCAGTGGCAGACGCCATGAAGGTGATCGGCTTCACAGCAGATGAGCTCCAGACGGTTTACAAGGTCCTGGCCACTATCCTGCACCTGGGCAACCTGACGTTTGGTGTGGATGGTGACACAACACTGATTGAGAACTCCAAGGTGGTGGCGGTGATCGGGGACCTGCTGGCCACTAAGGAGGAGAATGTTGAGAAGGCCCTGCTCTACCGCACTGTGGCCACCGGCCGTGACGTCATTGACAAGCAACACACAGCCCAGGAGGCCAGCTACGGCCGGGACGCCTTGGCTAAGGCTATGTACGAAAGAATGTTCTGTTGGATCGTGGGAAGGATCAATGATGTCATCGAAGTAAAAAACTATGATGCCAAAGTCCACGGGAAGAACACGGTCATCGGCGTGCTGGACATCTACGGCTTTGAGATCTTTCAGAACAACAGctttgaacagttctgtattaACTACTGTAATGAGAAGCTGCAGCAGCTCTTCATTCAGCTGGTGCTGAGGCAGGAACAGGAAGAGTACCAGCGCGAGGGAATCCCCTGGAAACATATTGACTTCTTCAACAACCAGATCATTGTGGACCTGGTGGAGCTGCAACACAAGGGCATCTTCTCTGTGCTGGACGAGGCCTGTATGAACGTGGGCAAAGTCACCGACAAGGTCTTCTTACAGGGACTCAACAGCAAGCTGGCCAATCACGCCCACTACACCAGCCGCAAGctCTCCCCGACAGACAAGAGTTTGGAGTTTGACAGAGATTTCCGTGTCCGGCACTATGCAGGGAATGTCGTGTACTCTGTGGTTGGCTTCATCGACAAGAACAAGGACACTCTCTTCCAGGACTTCAAAAGGCTACTGTACAACAGCTCCAACCCAGTGCTGAAAGTGATGTGGCCGGAGGGCAAGCTGAAGATCACTGAGGTCACCAAACGACCCCTAACGGCCGCTACCCTCTTTAAGAACTCAATGATCGCATTGGTGGAGAACCTGGCTTGCAAGgagccGTACTACGTGCGCTGCATCAAGCCCAACGATGTCAAGTCGCCCCTGCTGTTCGAGCACGAGCGTTGTCGCCACCAGGTCGAGTACCTAGGCCTACTGGAGAACGTCCGTGTGCGCCGCGCCGGATTCGCCAACCGCCAGGAGTACCCCCGCTTCCTCCAGAGGTACAAGATGATCTCGGAGTTCACGTGGCCCAATCACGACCTCCCATCGGAAAAAGAGGCGGTAAAGAAGCTGTTGCAGGGCTGCGGCTTCGAGCAGGACGTGGCGTACGGCAAGACGAAGGTGTTCATCCGCACGCCACGCACCCTCTTCTGCCTGGAGGAGCAGAGGACCGAAATGGTTGGGAGAATCGTTCTCTTCCTTCAGAAGGTATGGCGTGGTACCATAGCCAGGATGCGTTACCGGCGCATGCGTGCCGCCGTCATCATTCTACGGGCCTACCGGCGCTTCAAAGTCAAGTCTTACATCAAAGACGTCAACCGCAAATTCAAAAATGTGCGCTCCATGAAGGACCACGGCAAGCACGTCAAGTGGCCCACGCCGCCCAAAGTCTTGAGGAGGTTTGAAGAGGCGCTGCGGAGCTTCTACAACAGGTGGTGGGCGTGGATGCTGATCAAAGACATGACTCCAGAGGAGAAGCTGCGGATCAGAGCCAAGGGTGCCACCCTGGAGGCCCTCAAGGACCAGAGACCCGACCTGGGGCTGCAGAGGACCTGGGAGGGCAACTACCTGaAACGAGACAGTCCTGACACAGCGTCCTCCTTCACCTTGGTGTCCAGTGAGCTGCAGCGTAAGGACAAGTTCATGAGAGTTCTCTTCTCCTGCAACGTGCGCAAGATCAACCGTTTCCACAAGGCAGAGGACCGAGCCGTCCTCATCACAGACCGCCACCTGTACAAGATGGACCCCCTGAAGCAGTACAAACCCATGAAGAGCATCCCCCTCTACAACGTGACTGGGATCAGTGTGTCCCCTGGTAAGGATCAATTGGTGGTGTTCCACACTAAGGACAGCCGGGACCTGGTGGTTTGTCTAAAGGGCATGATGCCTGCCGGGGACAGCCGCATTGGAGAGCTGGTGGGCACCCTGCTCAGCCACTTCAAAAGTGCCGCCGATGCCAGCGGAACTGCCTTGAACTATGAATCACTCTCTCTGTTGTGACGTGACTGAAGGACAATTCCAAACCCGCTGTGCCGCCTGGCTAGAACCATTAGCGACCTGAATGAGtgagaAGAGGAAGCTGCAAGTGAATATCGCCAGTCCCATCCAGTGCAGTATGAACGGCAGGAAGTGCACCATCATTGTGGAGCCCAAAATCAACCAATCACAGCCAGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541743 lncRNA downstream 5074 18096883 ~ 18097176 (-) True G1348631
TU1541733 lncRNA downstream 6433 18092488 ~ 18095817 (-) False G1348630
TU1541914 lncRNA upstream 111413 18334328 ~ 18334543 (-) True G1348784
TU1541931 lncRNA upstream 156618 18379533 ~ 18380412 (-) True G1348800
TU1541935 lncRNA upstream 167331 18390246 ~ 18390523 (-) True G1348804
TU1541908 lncRNA upstream 167856 18390771 ~ 18392168 (-) True G1348778
TU1541994 lncRNA upstream 291563 18514478 ~ 18514714 (-) True G1348858
XM_021564977.2 mRNA downstream 13915 18080272 ~ 18088335 (-) True LOC110491492
XM_036946370.1 mRNA downstream 28861 18026514 ~ 18073389 (-) True LOC110491491
XM_036946369.1 mRNA downstream 28862 18026514 ~ 18073388 (-) False LOC110491491
XM_021564971.2 mRNA downstream 118357 17981389 ~ 17983893 (-) False ormdl3
XM_021564980.2 mRNA upstream 569 18223484 ~ 18226919 (-) True LOC110491495
XM_021564981.2 mRNA upstream 8611 18231526 ~ 18242108 (-) False pdk2a
XM_036946372.1 mRNA upstream 8611 18231526 ~ 18242110 (-) True pdk2a
NM_001124580.1 mRNA upstream 173562 18396477 ~ 18405643 (-) False LOC100136345
XM_021564384.2 mRNA upstream 173562 18396477 ~ 18409233 (-) False LOC100136345
TU1540612 other downstream 710296 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 906121 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1172818 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 194700 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 411116 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1097955 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1238126 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1468777 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile