RNA id: XM_021564981.2


Basic Information

Item Value
RNA id XM_021564981.2
length 2992
RNA type mRNA
GC content 0.44
exon number 11
gene id pdk2a
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18231526 ~ 18242110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTATTGGCTGCAGGTTTTCACCGAGCCTGTTCTTTTGGGCAATCAACATTGGAACAGAAAGAGCACTTGTAGTAGCcctatttttttcccccaaagcGATTTACTGAAGACGTCAACGATGAAATTCGTGAGATTTATAATGAAAAATGCTACATTGGCCAATGTGCCTAAACATATAGAACATTTTGCAAAATTTTCGCCGTCACCACTCTCTATGAAACAATTTCTCGATTTTGGTTCCACCAATGCATGCGAGGCGACATCATTTGTCTTTTTGAGACAAGAGCTACCTGTGCGACTATCTAACATCATGAAGGAGATCAATTTGCTACCTGACCGATTGCTTACAACCCCATCCGTGCAGATGGTGCAGAGCTGGTATGTGCAGAGCTTGATGGAAATCCTTGCGTTCTTGGACAAGACTCCTGACagccacagtgtcctggatgaGTTTGTGGACACCCTGGTGAATATCAGGAACAGGCACAATGAAGTAGTGCCCACCATGGCACAGGGCGTCATTGAGTACAAGTCGGTGTTCGGCCAGGACCCAGTCACCAACCAGAACATTCAGTACTTCCTGGACCGTTTCTACATGAGCCGTATATCTATCCGCATGCTTATCAACCAGCACACTCTTGTGTTTGATGGAGCAACGAATCCACTTCACCCCAACACAATAGGGAGCATCGACCCTcactgtgatgtcacagaggTGGTCAGAGATGCTTACCAGAGCGCCAAGTTGGTGTGTGATCAGTACTATCTGAGCTCGCCAGACCTGATGCTGCAAGAAATGAATGTCAACAACCGGAAACAACCTATAAGCATTGTCTATGTGCCCTCCCATCTCTACCACATGTTGTTTGAGCTTTTCAAGAATGCTATGAGGGCCACAATTGAGAACCATGATGCCAGCAACAGGCTACCACCCATTCAAGTCATGGTGGCCATTGGAGGAGAGGACCTGTCAATCAAGGTGAGTGACAGGGGTGGCGGAGTCCCTTTCAGGAAGATTGAGAATCTTTTCAGCTACATGTACTCTACGGCCCCCACGCCAGAGAGGGGTGAGCACTCTCAGACCCCATTGGCTGGCTTTGGCTACGGCCTGCCCATCTCCCGGCTCTACGCTCAGTACTTCCAGGGAGACCTGCAGCTCTACTCTATGGAGGGTTACGGCACTGACGCTGTCATCCACATGAAGGCCTTGTCCACAGACTCTGTGGAGAGGCTCCCGGTGTACAACAAGACAGCTCTGCGGAATTACAAGGTTAGCCAGGAGGCAGACGACTGGTGTGTGCCCAGCAGAGAACCCCTGGACCTGACCATTTACAGGGTAGCCAAATGAGGATAATGTCGACGCCACCCTGGTTAGATTGAGGCTCTGTATGCCAACAGCCAAGGCAGACAGCCACCTAACCCCGCCCACATATGACTGGATGTTTTCCATCCTGGTTTTGGCATTGGCATGTTTTCTTGTTCTCACAATGATGCCCTTCATGGTTTTCTTTTAGCTTAGATTATAAAAACATATAATCTTTGTTCACCTCCATGAGGGTTTTTATGGGAGTGCCAGATGttgataataaaataaaaaaaagttgtcACACTAATTATTCTCCCAAACATTTAATGGGCATACAAACATGGTTGCTTTACCCATGAAATGTTTGGGAGCATAAGAATGTGTGGCTTTCTTTTTCTAGTTTACTCTCCGTTAGTCAGCACTTCTATTAAAAACATTTCTAGGTGTGTGTCAGTTTATGCCTTTTACTATCGCTCGATGTTGATGAAATAAACATGGGAGGGTGTGCAGGGTAGTGCGGTCCCAATGTCATACTTCATTTTTGGGGGGAGAGATGTGGCAGGGTGGGTCTGAAGACCCAGATACTGTGCCCAGTATGTTGTTGAGAGGGTGTAGCGTGACCGTGGGCGAGTGAGAATATGTAACACCagttcagtatgttatggaacgTTCAGGTAGAAACGTTGTGTAGAGCAGCCAAGCCTTTCTATCATGTCGACTAGGGAATCACGGCATCTCTATACGTAACAttttctatctgcaacattcaGAATGTTGCGTCCTTCTGAACCGGACCGAGGTTGAAAAGACAATCCGATGTGTTGGTTGAACTCTCTGAGAGGATCTTTATGTACTGTAAACAGAAGTGAGCTGGAGCTGTTGAGGTGTGGTAGAAGTCCTTAGATGAACCAGTACTGTAGAATAACTGAATGTCCTGGCGGGCATTAGACCTCCCTTGCTCCAAATCGCTGACTGTCAGAAAATGCCACCTCAGCCTTAACTGCGTCAGTCAAGTTCTCTTTACTTGAACCATGTACATTATTAACAATGTAGTATTCAATCTATGAGAAGGCTGCTAATGACTTACTTATTTGATTCTAAAATAATATTACGTACTGTTCTACCATGTCTTGATGCCTTCATGAGTATTGGTCCTGATGTCTATATATTGATTTCATCATTTCAAGTACATTTTCTCTTGCCAGTTCAATGGACAGGATTCAACTAACAAAAATGAGTTGGTCTGTTCAGTGTTGTGACGTTCTGTATTCCTGTGAACTCAAGCTCTAGAGAAATACATTGTGGAAACAATTTTACCCAAGTTCATTTGCAGTAAGACAGTGATATACTTTGTGATAGGAAGCCAGTGTTCATCTTTTACGCACCGGTGTTCTATTGCCAGTGGCAAAGTTCATCAGAAGCTAGTTAAAACACATCCCAAAGGGCAAAGCACATCGTTCTTATTGTCTGTGACCCTTAAGGTTAGGCCAGTCACATAGGAATATTTGATGCTGTGTATGTGATGGGAAGATTCTCCCAGCCTATCCGCTTCTATCAATTCCCTTTTATTTTGTAATAAACTCTATACATTTCTTCAGTTATATTGTAAGTGTTTTAaatgaaaatatttttttcattgacATTGTAAATATGTGGTATTATTAAACCTATTTCAATGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541807 lncRNA downstream 32418 18198801 ~ 18199108 (-) True G1348689
TU1541787 lncRNA downstream 67164 18163359 ~ 18164362 (-) True G1348669
TU1541743 lncRNA downstream 134350 18096883 ~ 18097176 (-) True G1348631
TU1541735 lncRNA downstream 135709 18092488 ~ 18095817 (-) False G1348630
TU1541914 lncRNA upstream 92220 18334328 ~ 18334543 (-) True G1348784
TU1541931 lncRNA upstream 137425 18379533 ~ 18380412 (-) True G1348800
TU1541935 lncRNA upstream 148138 18390246 ~ 18390523 (-) True G1348804
TU1541908 lncRNA upstream 148663 18390771 ~ 18392168 (-) True G1348778
TU1541994 lncRNA upstream 272370 18514478 ~ 18514714 (-) True G1348858
XM_021564980.2 mRNA downstream 4607 18223484 ~ 18226919 (-) True LOC110491495
XR_005036457.1 mRNA downstream 8611 18102250 ~ 18222915 (-) True myo1d
XM_036946371.1 mRNA downstream 8616 18098959 ~ 18222910 (-) False myo1d
XM_021564977.2 mRNA downstream 143191 18080272 ~ 18088335 (-) True LOC110491492
XM_036946370.1 mRNA downstream 158137 18026514 ~ 18073389 (-) True LOC110491491
NM_001124580.1 mRNA upstream 154369 18396477 ~ 18405643 (-) False LOC100136345
XM_021564384.2 mRNA upstream 154369 18396477 ~ 18409233 (-) False LOC100136345
XM_021564383.2 mRNA upstream 154369 18396477 ~ 18409234 (-) False LOC100136345
XM_021564385.2 mRNA upstream 154369 18396477 ~ 18409234 (-) False LOC100136345
XM_021564386.2 mRNA upstream 154369 18396477 ~ 18409234 (-) True LOC100136345
TU1540612 other downstream 839572 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1035397 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1302094 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 175507 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 391923 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 1078762 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1218933 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1449584 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile