RNA id: XM_021564384.2


Basic Information

Item Value
RNA id XM_021564384.2
length 4150
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC100136345
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18396477 ~ 18409234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCTAGGTGCACTCTCAGTTGTCGGGCCACATGTCTAGCAACAAACATCCCATGAGCACATGTAATTCCTTAGGCTAATGCGGATAATTCCCTGGCCACATTGCGCAGTGGCACAGCTATCCGTGGATTTGGGTGATGCGTTTGACTCATTACACGTGCACAGCGAAGCAGACATTGGCAGTTTCTACAATACTTTTTGACGGCTTGTCTTGTTTTTCCGCACGTGTGTTGAGAAAGACATGGTCCCGCAATCGGGTAAAGCTGTGTGATTTGTCAAACAAATGGGAAATCACGAGGTTTGTCGGACATTTCAAAATATATTCATTACCGCGATGAGAGTGGTCACACATGAACTTCAGACCCATACTTCTGAGATGACTGGGAGTTTGTAGTGGAACAGTCTTATTGAAAAATCTAGCAATAACACAAGGGAGGGAAGCCTGACATTATCATTTCAAAATGGATTCGTTTCAAAATCCTTACGGGTCCACGCTCAACCGCAGCCAATCTCTGATGAGTGGCCTGGAGAAGACCCCTCCCACGTTGAACAAACCCACCCACTCTCGGAGCAGTAGCACTGCCTCCTCCCGTCACTCTCGGAACATTAAAGACTGGGAGGTGATGGATGACCTTCAGGTGGAAATGATGTCTGGTGACAACTCCCAGGACCTGACCATCCCAGGCATCTGTGAAGGATACCTCCTCAAGAGGAGAAAATGGCCCCTGAAAGGCTGGCACAAGAGGTACTTTGTGTTGGAAACGGGGATCTTACGATATTCCAAAACCCAACAAGATATCACAAGGGGAAAGCTTCATGGTTCATTAGATGTCGGCCTTGCAGTCATGTCTATCAACAAGAAATCCAATCGTATCGATTTGGATGCAGGAGATGTTCTATATCATATGAAGGCCAATAGTCATGACTTGTTCTACATCTGGGTGGCCAAGCTGAGTGCCCATCGCATGTTCAAGAAGAATGAGGCTGCTCAAGTGCACAATGGCTTTTTCCAGGCCTTGTCCCAGGGCACCAGTGTGCCTGGACTAGCACAGAGGAACGGCATGCAGGACGTGTCTTCCTACCAACACTACCATAGCACTACAGACTCTTACGTGGGTGAGATAGCTGCACCAACACCGTCTGAGTTTCCCTCTGTCAACCCGGGGGTGAATGGGAAGGTGTCAGCCTGGTTACAACAGACTCATGACCCAGACAGCTGTGCTCAAGagcTGAACCGTTGTCAGTTGGAACTGTCTGAGCTGAACCGACTGGTCCGGAGGCTGCAGTTGCTGGAAGGGGGCCAGCAGGCCTTCACCGACGGCGAGCTGCAGCGCATCATCAGCATGCAGAATCTCTCTCTTGAGAAACCCAAGAAGTCCAGGTCTTGCAAGATATGGGGTCACTCGCGCACAATGTCAAGGGTAGAGGCCCTTGGAATGGTAAGACAGCTGTCCTCTAGTCACCTGAACAGCTCGTCCCAACTGGGTGCGTCTGTCCCCTCCCTTCAAGACTATGTCCCCGCCGTCCCGGACTATGTCTACTCCCAGCTGTCCCCTCCCACCAACACCTCCCCAGAAGGCAGGAAGATCCAGCAGGACATCTGTAGCGTGTCCCAAAGAGTACACGCGTCCCTCAAGTCTGTGCATGATGCCTTGGCCCAGGAGCGTCAGAGACTGCAGGATACCTACCACCAATCAACCACACTGGCTGAGaCTGTATCTGGGAACGAGTCCCGTCGCACGCCATCGGTGACAGACTCTGCAGCTGAGTATTTTGATGCGAGTGACGGTGTCCTGAATGGGAGCTTCTCTGAGTCTGAGTCTGGTCTGAGTGAAGGGACAACCAGCAACTCTGAACCTGAGGAAGGACATgCTTCAGCCACTCGTGAGTACCGTGCCAGCATCTCTAAGACTCCCAACTGTGTCGTGCCCAAAAATACGGGCCGCCGTACCACCCTGGCCGCCCACTGCCCGGACAACGCCCAGGTGGGCCTGATGCAGATCCTCTATAACAACATAGGCAAGGACCTGTCCCGTGTCTCCATGCCTGCTGCTCTCAACGAGCCCATCAATCTGATGCAAAGACTGTGTGAGGAGCTTGAGTACTCTGAGCTGCTGGACACTGCCAACAACACACAAGACCCCTACCAGAGGATGGTCTACGTAGGTGCCTTTGCCATCTCTGGCTATGCTACAGCTCACTACCGCAACCGCTACAAGCCCTTCAACCCACTCCTGGGGGAGACCTATGAATGTCTGAGAGAAGACAAGGGCTTCCGCTACATCAGTGAGCAGGTCTGCCACCACCCCCCCATCTCTGCGTGTCACGCAGACTCCGATAACTTCTCCTTCTGGCAGGACCAGCGGTGGAAGAATAAGTTCTGGGGGAAGTCACTGGAGATCATGCCAACAGGGATGGTGAATGTCACTCTCCCGAGGTTTGGGGACCACTATGAGTGGAACAAAGTGGTGACCTGCATCCATAATGTCCTGAGCCAGCAGCGCTACCTGGAGCACTATGGGGAGGTCATCATCCGTAACCTCAACGGCAATGCGTGCACCTGTAAGATCACCTTCGTTAAGTCCCGCTATTGGGGGTCGGACACCAACAAGAATGAAGTGCAGGGCACCGTGCTCGACCAGACTGGGAGTGTTATCCACCGGTTTGGGGGGCTGTGGCATGAGGGCATCTTCTGTGACACCTTGCCCACTCCACAGTGTATCTGGAAGCCAAATTCCCAGCCCAAGGACTACTACCTGTACTACGGCTTCTCAAGCTTCACACTAGAGCTGAACGAGCTCACCCCAGGCCTGAAGCCTCTTCTGCCCCCCACAGACTCACGCCTTCGTCCTGACCAGAGGatgctggaggatgggagggtggatGACTGTGACAAGTTTAAAGAAGAAGTGGAAGACATGCAGAGGGAGCGGAGGAAACAACTGGCTAAGAAAGGACAGGAGCACACGCCGCGCTTCTTTAAGAAAGCCATGGATTCCTCTGGGAGGGATGTGTGGCTGACCAATGGAACCTATTGGAAAGTCCGAGAGAACCCGGGCTTTGCTAACACCAAAAACCTGGAACTATGGTGAATAAACAGACCGACTGGGGCCATTTGTTGGAATTGGTGAAGGCATCGATGAACCGTCCTGAGGTCCCACCTTCCATCATTGCCATCTGATTTGCACTCCCTCCCTGGCTGCTTCATGGGAAACCTCTGGGGAAAGTCTGGAAACGACTTGCATCCACTGAAACGTCAAGTTGAAAATAGTTCCCAGAATGTGTAGTGTCACCTGTTCCGCCACCTGGAAAGGATAAATAGACTTTTCTCTCATACTCGCATTTAGTCCATTGCAATGTATTTATGGTCATTCCCCATTTGTGTACATTTATGTTATCCTGTCAAGATGTATTTGCTTTCTAGAGGGCTGGAAGTGTGAGGTTAATTTGCTCAGGTCAAGACATTTACTGTGACTAATCTTCAGATATTGTAAAGGTAgaaaaatgtgtatttaataCTCCCGGAGCTCCTAACTCAATCTTTTTGCGTCATCACTCAATTTTCACACGTCTCTCTAAGTCATCTATGCATGATTTGTGGATCCTAAGTTAGGATTAAGCCCATTTTATGAATTATTGTTGAATCATATTTATTTCAGTGGCATTGGTGTGTTCAAACATTCCTTTCTCCTACCTGAGTGTTTTAGTAAGTCAAACAATTTGACATGGGAATGGAACCTATAACAGTCTGTCATTTAGGGTGCACATAAACTACTTTTTATAATGTAAGTGTTGTATTTTTGATTAGATTTTTAGTGAACAATAATAATGCTGTTACTTGTGATTTAACAAATTGCTCTTGAAAGGGGTTACCAAGGCAACTGGTTGCATAATGAGTCTGTGTTAATAAAGTATATTTTATGATTGAGTATAATTAAATTATAATCAAGCTATACTTAATATCAACATGTCTAATATACAGTACAATGGGTATGTGGGTATTATTCAGTTTATAATTTTGAGgttgtcttttttttattttattttttactttggtTTGAGATTCAATTTAAACAGTTGTGATTATGAAATGTTAATTCATGAATAAAACACAGTAAAAGACAATTAAAGCCACCTTTTAATAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541908 lncRNA downstream 4309 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 5954 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 16065 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 61934 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 197369 18198801 ~ 18199108 (-) True G1348689
TU1541994 lncRNA upstream 105245 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 114946 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 118942 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 120298 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 124321 18533554 ~ 18533859 (-) True G1349314
XM_036946372.1 mRNA downstream 154367 18231526 ~ 18242110 (-) True pdk2a
XM_021564981.2 mRNA downstream 154369 18231526 ~ 18242108 (-) False pdk2a
XM_021564980.2 mRNA downstream 169558 18223484 ~ 18226919 (-) True LOC110491495
XR_005036457.1 mRNA downstream 173562 18102250 ~ 18222915 (-) True myo1d
XM_036946371.1 mRNA downstream 173567 18098959 ~ 18222910 (-) False myo1d
XM_021564983.2 mRNA upstream 542 18409775 ~ 18412088 (-) True mrpl10
XM_021564984.2 mRNA upstream 8339 18417572 ~ 18423242 (-) False prr15lb
XM_021564999.2 mRNA upstream 24952 18434185 ~ 18437177 (-) False si:ch211-194k22.8
XM_021564997.2 mRNA upstream 24952 18434185 ~ 18437178 (-) False si:ch211-194k22.8
XM_021564998.2 mRNA upstream 24952 18434185 ~ 18437208 (-) True si:ch211-194k22.8
TU1540612 other downstream 1004523 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1200348 17195330 ~ 17196129 (-) True G1347343
TU1539994 other downstream 1467045 16924522 ~ 16929432 (-) False G1347067
TU1541907 other upstream 8382 18417615 ~ 18423186 (-) True prr15lb
TU1542585 other upstream 224798 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 911637 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1051808 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1282459 19691692 ~ 19697658 (-) True LOC110491553

Expression Profile