RNA id: XM_021564998.2


Basic Information

Item Value
RNA id XM_021564998.2
length 1703
RNA type mRNA
GC content 0.43
exon number 7
gene id si:ch211-194k22.8
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18434185 ~ 18437208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTGCCACGTTACGCCTCAGTGTATAAaatcctcactccctctctctgttttggcATCAAAGGGGATGTCTTCGCACGATGGTTCTGGAGTAGAAGAAAGACAGCAAGCGTCCCATCCTCCGTTTACCCAGGACACTTTCACTTATCAGTCTTCCCCAATATTTTGAACACGTGCAGTATGCTGGGCACAGTTTTTCTGCAAGGCAGTTAATGGAATAGAAATATGAGAAGGAAATCAAAGGCGAAACGAGTCCTTGACTACGAAAGTGAAGAAGATGAAGACGGGGCTCAAAAAGTAGATAATGGGGCGCAGAAAAGAAGAAAACAGATGTATCTTGATAAAGAGACAGTCGAAGAAAATTCTTTATCCTCAGCCGGCTTCCAGAAGTGGATACGGGCTTTTGAGCTGGGCAGTCCTAACTTGTATCACCTGAGGGACAGCAATTCCAATACAGAGGAGTCAGAGTTTCTGCAGTCATACTCCAAGATGAAACTCATTCCTATGGTGATTTGCATGCAAAGAGAGATGGAAAGCTTGAAAGACCAAATTCAGTGCCTTACAGCTTGTGGAGAGCTGTCCAGAAACCTCAAAGCCCTGATAGAAAAGACCCAGAGGTGGTCGAATGAGGACAGCAAGACATCTGTCCAAGCATCACGTCCCAGCCTAACTGTAGGACTTGTCAGTGGAGATGCCATGACCCCAGATTTACTGGCCTGCCCAACTGGGATGATTGGGCAGTGGGAGAAACAGGGGGCCTTACCCCAGAAACTACACAGGCACCATAGGGATGGACTCTTCACTGAGTTCATTACCCCAGAGTTGTTGGAACGGTGCAACACTGGCACTACAGCTCAGAAACTGACCAATGACCTGTTGCGAGGGCTGTATGAGAGGGACTGCCTAGCATCCCACTCCATCTCAGGGCTGGTGTACCACAAGAGGTCTCAGACCAAACCTGCTCTCCCTACTGAGGAGGTCCAGGCCATACTGAGGACAGTTCAGTATTTTTTTCCTGGAAAGACAGATGTGGAAATTAAAGGATACATCCGGCAGAAACTGCAGAACGAGGCGAAGAGGCTGAGGAAGAAGCCTCCACTGTTGGGAAATATGGATTCCAGCTTTGACCTCCCCTGCCCCAGAACGTAGTGTTAACATGGATTTTGTCGAGGATCAAAGGTGAAATATCTGATTGTGGATAATTGACAAATGCATGGAGGTaatatttaacttttttttttttttacttcaatgAACCATGTTTGACTGCTGACGTTTGTGAGCGGTTGAGATTTGAATAGGTGATCATGCAGAACGCAAGTTTATCCTCAGTTCAGTCAAACATGAATTCAAACTTTGCATTCACCCTGGCCTCTGGTTGCTGTAGATCTAAATAAAGCATAATACTGTAGCATATGTGAACTTTATGTCCCGATTATAAATAAATGCCAATTGTTTTTGAATTTTGTATTTTTAAGATAGTCATTTGCAAAACATTGGACCTTGCAAAATCAATGCTGAACGAGTGTTAGCACATTCTCAATGCCTTTGAAAATTAACTGTATGATGAGCCCCATGATGAgttagtgttgttgtttttgttgcaatgACAACCTGATAGTTGATTGGATTGAACAAAatatatctggaaatgtgcagtTTTTCCTTTATCCTGCATTATCAATAAAATACATAAGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541908 lncRNA downstream 42017 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 43662 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 53773 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 99642 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 235077 18198801 ~ 18199108 (-) True G1348689
TU1541994 lncRNA upstream 77270 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 86971 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 90967 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 92323 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 96346 18533554 ~ 18533859 (-) True G1349314
XM_021564984.2 mRNA downstream 10943 18417572 ~ 18423242 (-) False prr15lb
XM_021564983.2 mRNA downstream 22097 18409775 ~ 18412088 (-) True mrpl10
XM_021564383.2 mRNA downstream 24951 18396477 ~ 18409234 (-) False LOC100136345
XM_021565002.2 mRNA upstream 10708 18447916 ~ 18457519 (-) False cbx1b
XM_021565000.2 mRNA upstream 10708 18447916 ~ 18457520 (-) False cbx1b
XM_036946374.1 mRNA upstream 10708 18447916 ~ 18457521 (-) True cbx1b
XM_021564996.2 mRNA upstream 39869 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA upstream 40462 18477670 ~ 18512412 (-) True LOC110491502
TU1541907 other downstream 10999 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1042231 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1238056 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1504753 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 196823 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 883662 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1023833 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1254484 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1893192 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile