RNA id: XM_036946374.1


Basic Information

Item Value
RNA id XM_036946374.1
length 1819
RNA type mRNA
GC content 0.43
exon number 6
gene id cbx1b
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18447916 ~ 18457521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacagtcgCCATTTTCCCTTCATGATAAATGTTACAGCACCGACATTTTTGACTTTATTAGCTAAAATATTATGGACAGGAGGAAATCATACACATTTAGTAGAAAATGTTGTGTTAAAATCGAACATGTTCTAACGGGAGCGGACATATACCGCGTTGGTACACTCACTGAGCAGATCGGCCGACTAGCTAATCTCTAAATCATCTGAGACACCTACATGAGATAACTTTGGTTACGTTGGGAAATCCACACAATGTAGAATCGATGCACGTGTACAAAGAATTTTTGAGATCGGAGACGAAGGGGGCGGACACGATATTTAGCTTACACAAGCTCATATTTGATTGATAATAAACTAAACACATTTATAAGAAATTATAACCCATATTATTTTGCTAATAATATAAACATTTGAAAACAGACACTGTTTTTCCTCTTGAAATACTCGTTTTGAGGAACCAACTGCTGGTCCCACGGTCTACCTGATGAGTATGAGCGAGTCTACAGAACCTTCTAATGATGCTCCCACTCTCACTGAAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCTCTGCACCTGCAGACATCATTCCCCCTGCACCCACAGCCCCCACCCAGTCTCAGGTGACGATGACAACGCCGGCTGAGAAGAAGGCAGAGGATGTGGTGCccgtggaggaagaggaggaggaagaagaataTGTGGTGGAAAAGGTCTTGAATCGAAGAGTAGTGAAAGGAAGAGTGGAGTACCTTCTCAAGTGGAAAGGCTTTTCGGATGACGACAACACATGGGAACCAGAGGATAATTTGGATTGCCCCGACCTGATTGCACAGTTTCTGCAGAAACAGAAATCGGCCCATGAGTCTGTGGGTAAGAGGAAGTCTGCAGAGACcagtgtggaaggagaggaaAGTCGACCCAAGAAGAGAAAAGATGACCCAGAGAAACTAAGGGGCTTCGCTCGAGGTTTGGATCCAGAAAGGATTATTGGTGCCACTGACTCCACTGGAGAACTCATGTTCCTCATGAAATGGAAAAACTCTGATGAAGCAGACCTGGTACCCGCTAAGGAGGCAAACGTGAAGTGTCCACAGGTGGTCATATCCTTCTACGAGGAGCGGCTTACGTGGCACTCTTACCCCACCGAGGAGAAGGAGGACGACAAGAACTAGCCGTTTGGTGTCAAGCTGGTTCTGAAGACTATAGAGGTAGTGCAAGGGCATATGGGTTCTAGGCAGAGGGTCTGAAAAAGCAAGATAGCATTTGGACTCCCTTTTGGCTTAATATCACCCATCAGGTTAAACTCTTATCTGGATATGATCAGTCAATACAGGCTATGGGTTATCTTGAGGAAACACAACCCTGGAAGAAATATATAATGCAGTGTTAATTTTTAAAGATTCACTTCAGTGATGGTTTATTTGGATACTAAAAGATCATTTTCACACTGCACCCTTGATTAAGAGGTCCAGACCTTTTTGCTATGACATTACTGTATAGGCTGGTGGAGATGTTATCATTCATAGTGTTGTGAACAAGAGAACAGTGCCATTTTGTCTTTTAACGTAAATGTTTTGTAGCGTTTAGTGCAAAACGATGTTAATCTGTGCTCATTTTGTGACGGTTTTATTCGTGTATTAAGGTGACTTGTTGAAAACCATATCTTTTTACTTTGCTCATTCATCCATATTATCATTCTAACATTTTCATAAACAGAACTTGCTTGTCTGTTTTTGGAGAATAAACAACTTTTTGTTACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541908 lncRNA downstream 55748 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 57393 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 67504 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 113373 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 248808 18198801 ~ 18199108 (-) True G1348689
TU1541994 lncRNA upstream 56957 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 66658 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 70654 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 72010 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 76033 18533554 ~ 18533859 (-) True G1349314
XM_021564998.2 mRNA downstream 10708 18434185 ~ 18437208 (-) True si:ch211-194k22.8
XM_021564997.2 mRNA downstream 10738 18434185 ~ 18437178 (-) False si:ch211-194k22.8
XM_021564999.2 mRNA downstream 10739 18434185 ~ 18437177 (-) False si:ch211-194k22.8
XM_021564984.2 mRNA downstream 24674 18417572 ~ 18423242 (-) False prr15lb
XM_021564983.2 mRNA downstream 35828 18409775 ~ 18412088 (-) True mrpl10
XM_021564996.2 mRNA upstream 19556 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA upstream 20149 18477670 ~ 18512412 (-) True LOC110491502
XM_021565005.2 mRNA upstream 64932 18522453 ~ 18525045 (-) False hoxb1b
XM_021565004.2 mRNA upstream 67685 18525206 ~ 18530752 (-) False LOC110491505
XM_036946377.1 mRNA upstream 67685 18525206 ~ 18532213 (-) False LOC110491505
TU1541907 other downstream 24730 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1055962 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1251787 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1518484 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 176510 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 863349 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 1003520 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1234171 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1872879 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile