RNA id: XM_021564996.2


Basic Information

Item Value
RNA id XM_021564996.2
length 1491
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110491502
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18477077 ~ 18512413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTCTTATTTTGCATTGGATGCATGCACGGAAATAGTTTTTGTAACAAAAGTGTACAGGTGTTGCATGAGTGTATTAGTATAGTGTGTGAGTATCCACATGCTTTCATTTCAAGCAGGGAACTGTTACAATATGACTGGAGTCCGGTCTACACAGATTCCATAACTTTTCAAAAAGTATAGTTTTGATTGACTTTATCAACATTTGTCTGAAAATTCCTCTGGCACTTTGATGGAAGGATGGGGACAGTCTCTGAAGAAGTTAGGAGGCTTTTGAATGACTGTGAGCTGTTTGTATCAGATATCCTACAGGATGAGAACCTCAGTAAACATGCCAGGGAAACACGGGACGTCCTACTTAATAACTTCAGGGTGATCTACTCCAGAAATCCTCAGGCGTTTCCCTTCAGATCTGAGTCCAGACAGGAGGACAGTTCAGATGACAACCAGAGCTCCAGTCTGGGCCGCTCGGCCCCCTCAGAAGACCTGTCAGTGGCCTCTGACTACCAGGACGAGGGCTCTCCCGAATACTTTGAGGAGATCCAAATGGTGGCAGCCCAGGATCTCAGCAACATCTTGAAACAAGGCTACCTGGAGAAGAAACGACAAGATCACAGCTTCTTCAGCTTAGAATGGCAAAAGCGATGGTGTGTCCTCAAAAACACAATATTCTACTACTTTGGGAGTGACAAAGacaagcaGCAGAAGGGCGCCTTCTATATCAAGGGTTACAGTGCAGAGATGGTGGCCAACCTACGTAAAGACTCCAAGAAAAATGCCTGCTTTGAGCTGAGTGCCCCTGGCCGACACTCCTTCCAGTTCACTGCTAGCAGTGTGCGAGAAGCCATGGAATGGGTGGACCAGATCAACTTTGTCCTGAAAGATTTGAGTTCCAGCTTTATCCCCTTTGAGGATGAGACCTATGATGACATTGAGGGGGTGACGGGGGTGGCCAGCCGTCCCCCTTGGCCCGCCCCCTACCCGGTCCTGCCCCAGCAGGTCAAAGCCTCTCtcagtagccaggaggaagggaAGCCCAGCCAGTGGGAGGAACAGGAAAAGGATGATATCTACGAGGTGCTCCCAGAGGATGACATTCCAGGATCCATTGAGGAGATCAGTGAGAAGAGCACGAACCCAGTGTGGTCCATAGACTATGCCAATTACTACCAGGGCTTGTGGGACTGTGAGGCAGACGAGCCTGACGAGCTGGCCTTCCAAAGAGGTGACCTCATCTACATCGTCAGTAAGGAGTATAACATCAATGGCTGGTGGGTCGGAGAGCTAAACGGAACCGTCGGTATTGTCCCTAAAGACTTCCTCCATCCTGCCTACATCCTCTGAGCTCCCAAGAGGTGGAACGACACTCACCCCGTTTGTTCAAGCTGAACCCAGAAACCCGCCCCACAACAGCAACACAGAATGCCTAAGGATGACACTTTTCCACCCCAGAACTTATGAATAAAACACAGTCAAAGTGGATTGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541908 lncRNA downstream 84909 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 86554 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 96665 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 142534 18334328 ~ 18334543 (-) True G1348784
TU1541807 lncRNA downstream 277969 18198801 ~ 18199108 (-) True G1348689
TU1541994 lncRNA upstream 2065 18514478 ~ 18514714 (-) True G1348858
TU1542009 lncRNA upstream 11766 18524179 ~ 18524379 (-) True hoxb1b
TU1542506 lncRNA upstream 15762 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 17118 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 21141 18533554 ~ 18533859 (-) True G1349314
XM_036946374.1 mRNA downstream 19556 18447916 ~ 18457521 (-) True cbx1b
XM_021565000.2 mRNA downstream 19557 18447916 ~ 18457520 (-) False cbx1b
XM_021565002.2 mRNA downstream 19558 18447916 ~ 18457519 (-) False cbx1b
XM_021564998.2 mRNA downstream 39869 18434185 ~ 18437208 (-) True si:ch211-194k22.8
XM_021564997.2 mRNA downstream 39899 18434185 ~ 18437178 (-) False si:ch211-194k22.8
XM_021565005.2 mRNA upstream 10040 18522453 ~ 18525045 (-) False hoxb1b
XM_021565004.2 mRNA upstream 12793 18525206 ~ 18530752 (-) False LOC110491505
XM_036946377.1 mRNA upstream 12793 18525206 ~ 18532213 (-) False LOC110491505
XM_036946378.1 mRNA upstream 12793 18525206 ~ 18550690 (-) False LOC110491505
XM_036946376.1 mRNA upstream 12794 18525207 ~ 18530512 (-) False LOC110491505
TU1541907 other downstream 53891 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1085123 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1280948 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1547645 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 121618 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 808457 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 948628 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1179279 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1817987 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile