RNA id: XM_021565005.2


Basic Information

Item Value
RNA id XM_021565005.2
length 2271
RNA type mRNA
GC content 0.40
exon number 2
gene id hoxb1b
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18522453 ~ 18525045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATACGCAATAATACATTGTTAAAAGTCCATAAAGGCACAATGATTTAGGCTGTTCTTTGTTCTCTCTCGAGCAAATTGGAGAACCAGCTGTCAAGCGTTTAGAGGAGCAGAAGATTGATCGTCGCATTAATTTCAAGACTCCTCTGTAAAATTAGCTCTCAGACGGAAGAACACGCCGAGCTAATCAAGTAATTCACATGAGCTGCTATACTTATACACATTGGGCAACATAATTCTCATAGAGAACGTCTGGTATTATACACCAATCGTATATCCTCTTGTTAACTGCATGAATGACAATGGAAACATTTCAGTTCACTAAACTTACTTACTCTTATAATACTGTTAAAAAAGCACAGCCAAAATACTATTTCGATCACATAGACCATCCAAATCAACTGTTTGCTTCAAACTCTAAATTTTCGAGAGACAAAATTGAAATAATTTTAAAATCTTTCACTTTTTCAGACTATCATTCTCCCTCAGTCTGACCAGAAGGTCCTTGCAGAAGTGGTGTGACGTGTTTCTGTTCTTATCAGATTGATGGGCGAGTTTGACTGAAGCATTTGTCATGTAAATGTGAGACGTTTGATGGACGATCCTGACCTGACAAACTGCTATAGGTCCCAATTGCCATTGGCGTAAAGTGAGTCACATGGTCTGTCACTAAGGTGATATGAGCGTGGTAGGCAGTTTTACAGATTTGACATACTACCTAGAGGTTGTAGGGCACAGGGAAGAGCAATTAAGGTGGACTGACCCGTCTTCATTAATTTTGCCATAACAATACAGGATGAACTCTTACTTAGATTATACCATTTGTAACAGGGGGACTAACATATTCAATGCCAATGCCGGACACCACAATTTAAACCATGGATACAGGTCCTCCTTATCTTCCAATTCATGCTCAACAAGTGATAGTTTTGTGTCCGATGGGCGGTTAGTTGGTGGTTCTTCGGTGCACCAGACTTCGAGCCACCCTCTGCACCAGCCCCAGCTACATCATATAGATCTCCAGTTTGGCTCAACGGGAAACTTGGTGTATGGCTCGCCAACAGGGCCAAACTTGGATTATGGACCTCATCAATACGCTCTAATTCATGAACAAGAACGAGGTTTCATTCAGTCGCCTGGGATTCCTGTGTCAGCCATTGGAACGAACATGCCCCCCCTGGCCGAAGGGAACAGTGAGCCCCTGGCCGAAGGGAACAGTGAGCCAGGGTCTGCAGCAAGCAGCCAGTATCTGCACTTTTGCAGTGGAGAACAGGGGCAACCAGAATACTTGGAGAGTATTTACTCGAGATTAGTTCCTTTCCAATATAGTGATAAGGATTCGGATGATTTCAATGCAGATTTAACTTCAAAAACTTTCGACTGGATGAAAGTTAAGAGGAATCCCCCTAAAACAGTTTCAGAGTATGGAGTCCCCGGTCAACAGAATGTAATCCGTACCAACTTCAACACAAAGCAGCTGACAGAGCTCGAGAAGGAGTTCCATTTCAACAAGTACCTGACCAGGGCCCGGAGAGTGGAAGTTGCCGCTATTCTCGAGCTCAACGAAACTCAAGTGAAAATTTGGTTCCAAAACCGCAGGATGAAGCAGAAAAAGCGTGAGAAAGCAGGAACCATCTTTCGAAACACAGCAGTACCGGCAAATGATTTGGGAGAGATCACCTCATCTCCTGATGTGTCGCCAAGCTCGAAGACCGCATAAAGCAATCGTTttacaaataacatttgaattaCCGCACTCATGGTGCTGCACTTTACTTGTCACATTTTCAAGGATACTGCAGGTTTACAGGGTTTAGGTGCACTAATTTCTGCAAACAATTTAGTTTCATGTTTGCACTATTTACGGGTATTTTCTACAAATACATTTAGATAATTATGTGAGAAGTTAgaaataaaatgtttgttttgaaAAGTCTGTATTTTTGTGCTGATTTGTACATTTGTGAGTGAATGAAATGTTCCCATACAGTAGGCTATAAAGTATTTATTGAATGTGACAATAAGGATATGTTGTAAGAAAATCTAAATCTTTGGAGCTAATTGAATTCTTCTTCGATGTTCTTTCTACGCAAATAGTATTTTGGGAGTCAACATTGTTTAACTGTTGTTGAAACTGTTTTAAATCTGCCTACTCATGAAATTAGGAATCAGATGGAAAAATATGTAATTTTCATTGAAATGCAATTCATATTGACAATCACATATGACTGATTTCTAATAATAGTTTTTACAAAATTAAACTTTAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1541994 lncRNA downstream 7739 18514478 ~ 18514714 (-) True G1348858
TU1541908 lncRNA downstream 130285 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 131930 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 142041 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 187910 18334328 ~ 18334543 (-) True G1348784
TU1542506 lncRNA upstream 3130 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 4486 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 8509 18533554 ~ 18533859 (-) True G1349314
TU1542520 lncRNA upstream 13031 18538076 ~ 18538335 (-) True G1349317
TU1542544 lncRNA upstream 28903 18553948 ~ 18554545 (-) False ttll6
XM_021564996.2 mRNA downstream 10040 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA downstream 10041 18477670 ~ 18512412 (-) True LOC110491502
XM_036946374.1 mRNA downstream 64932 18447916 ~ 18457521 (-) True cbx1b
XM_021565000.2 mRNA downstream 64933 18447916 ~ 18457520 (-) False cbx1b
XM_021565002.2 mRNA downstream 64934 18447916 ~ 18457519 (-) False cbx1b
XM_021565004.2 mRNA upstream 161 18525206 ~ 18530752 (-) False LOC110491505
XM_036946377.1 mRNA upstream 161 18525206 ~ 18532213 (-) False LOC110491505
XM_036946378.1 mRNA upstream 161 18525206 ~ 18550690 (-) False LOC110491505
XM_036946376.1 mRNA upstream 162 18525207 ~ 18530512 (-) False LOC110491505
XM_036946375.1 mRNA upstream 163 18525208 ~ 18532212 (-) False LOC110491505
TU1541907 other downstream 99267 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1130499 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1326324 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1593021 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 108986 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 795825 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 935996 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1166647 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1805355 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile