RNA id: TU1542009



Basic Information


Item Value
RNA id TU1542009
length 201
lncRNA type sense_over
GC content 0.42
exon number 1
gene id hoxb1b
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18522453 ~ 18525045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACTAAGGTGATATGAGCGTGGTAGGCAGTTTTACAGATTTGACATACTACCTAGAGGTTGTAGGGCACAGGGAAGAGCAATTAAGGTGGACTGACCCGTCTTCATTAATTTTGCCATAACAATACAGGATGAACTCTTACTTAGATTATACCATTTGTAACAGGGGGACTAACATATTCAATGCCAATGCCGGACACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1541994 lncRNA downstream 9465 18514478 ~ 18514714 (-) True G1348858
TU1541908 lncRNA downstream 132011 18390771 ~ 18392168 (-) True G1348778
TU1541935 lncRNA downstream 133656 18390246 ~ 18390523 (-) True G1348804
TU1541931 lncRNA downstream 143767 18379533 ~ 18380412 (-) True G1348800
TU1541914 lncRNA downstream 189636 18334328 ~ 18334543 (-) True G1348784
TU1542506 lncRNA upstream 3796 18528175 ~ 18528409 (-) False LOC110491505
TU1542508 lncRNA upstream 5152 18529531 ~ 18529762 (-) True LOC110491505
TU1542517 lncRNA upstream 9175 18533554 ~ 18533859 (-) True G1349314
TU1542520 lncRNA upstream 13697 18538076 ~ 18538335 (-) True G1349317
TU1542544 lncRNA upstream 29569 18553948 ~ 18554545 (-) False ttll6
XM_021564996.2 mRNA downstream 11766 18477077 ~ 18512413 (-) False LOC110491502
XM_021564995.2 mRNA downstream 11767 18477670 ~ 18512412 (-) True LOC110491502
XM_036946374.1 mRNA downstream 66658 18447916 ~ 18457521 (-) True cbx1b
XM_021565000.2 mRNA downstream 66659 18447916 ~ 18457520 (-) False cbx1b
XM_021565002.2 mRNA downstream 66660 18447916 ~ 18457519 (-) False cbx1b
XM_021565004.2 mRNA upstream 827 18525206 ~ 18530752 (-) False LOC110491505
XM_036946377.1 mRNA upstream 827 18525206 ~ 18532213 (-) False LOC110491505
XM_036946378.1 mRNA upstream 827 18525206 ~ 18550690 (-) False LOC110491505
XM_036946376.1 mRNA upstream 828 18525207 ~ 18530512 (-) False LOC110491505
XM_036946375.1 mRNA upstream 829 18525208 ~ 18532212 (-) False LOC110491505
TU1541907 other downstream 100993 18417615 ~ 18423186 (-) True prr15lb
TU1540612 other downstream 1132225 17389385 ~ 17391954 (-) True LOC110491477
TU1540318 other downstream 1328050 17195330 ~ 17196129 (-) True G1347343
TU1539999 other downstream 1594747 16924522 ~ 16929432 (-) False G1347067
TU1542585 other upstream 109652 18634031 ~ 18634405 (-) True G1349366
TU1542973 other upstream 796491 19320870 ~ 19325054 (-) True LOC110491541
TU1543183 other upstream 936662 19461041 ~ 19461815 (-) True G1349896
TU1543843 other upstream 1167313 19691692 ~ 19697658 (-) True LOC110491553
TU1545321 other upstream 1806021 20330400 ~ 20333729 (-) True LOC110491567

Expression Profile